CK936100

Overview
NameCK936100
Unique NameCK936100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASV 661
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H L       V  A+ L+ NI Y Y+   LS   ++AGWD    G  +  + GG L    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGVA +
Sbjct:   18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYK-EELSAHLIVAGWDRRDGGQVFA-TLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGGVAYI 193          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 56/188 (29.79%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKK 691
            GTT  A  +K+GV++AADSR +MG YI+++   K+ ++   +    +G AAD Q     L     ++ +      SV  A+ L + + Y  + M LS G ++AG+DE   G  Y    GG L     ++ GSGS + YG  D+ ++ +M+           +  A  RD +SGG   +  +  +G ++
Sbjct:   24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMER 210          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKK--LSGD 703
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+  +    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGV  +  +   G ++  L GD
Sbjct:   34 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAEPGVERQVLLGD 226          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 60/205 (29.27%), Postives = 94/205 (45.85%), Query Frame = 2
Query:   98 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG--WKKLSGD 703
            ++T     H+ GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L   + Y+ +   L  G +I GWD+   G  Y    GG +    F++ GSGS Y YG  D  +K  M+           +  A  RD ASGGV     +  +G   K  SGD
Sbjct:    2 ENTDVDQPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDR-LQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTINKDGATRKFYSGD 205          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 55/175 (31.43%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   83 FDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 577
            FD +Q++           KAT   + GTT +   F  GV++AAD+R++ G  ++ ++  K+  I+P +    AG AAD +   + +G    LH L   R   V  A ++L   L+ Y+G  +    ++AG D TG  L+ + + G    G   S+GSGS  A  VL+S +K D++
Sbjct:    6 FDNYQRNNFLAENSHTQPKAT---STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLT 176          
The following BLAST results are available for this feature:
BLAST of CK936100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB9_ORYLA1.158e-1531.46Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB6_SCHPO1.158e-1529.79Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_BOVIN1.158e-1531.44Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB9_MUSDU1.512e-1533.71Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB6_TOBAC1.512e-1529.27Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB9_MUSPL1.975e-1533.71Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSSI2.580e-1533.71Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB2.580e-1533.71Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MOUSE2.580e-1533.71Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSB7_YEAST5.747e-1531.43Proteasome component PUP1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004386_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936100 ID=CK936100; Name=CK936100; organism=Citrus sinensis; type=EST; length=708bp
TTCTCCTTTTTTCGAAACAGGCGACGAGCTCTGTCCTGAGTTATCCGCTG
CACCATCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAG
GACACTAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTT
TATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGG
GAGGCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCT
TACATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCA
CAGAAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTA
GAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCT
TATCGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGA
GACTGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAG
GAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTG
GACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGC
TAGAAGAGCTATTTATCATGCGACACCCAGAGATGCAGCCAGTGGTGGTG
TTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGT
GATGATGT
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