CK936100

Overview
NameCK936100
Unique NameCK936100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 58/185 (31.35%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GT+ +A  +  GV++ ADSR + G YI+++   KI  I+  +    +G AAD Q     +     +H         V  A+ L   + YS +   L  G ++AGWD+   G  Y  S GG +    F++ GSGS Y YG  DS +K  M+           +  A  RD +SGGV  +  +  NG
Sbjct:   14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKN-NLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIIDKNG 197          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 56/193 (29.02%), Postives = 91/193 (47.15%), Query Frame = 2
Query:  122 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKL 694
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R +  K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D TGP LY V   G   +    ++GSG   A  VL+  ++ +M++          +      D  SGG      +   G K L
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLL 225          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 56/189 (29.63%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  119 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            K   GTT +A  + +GV++ ADSR SMG Y+SS+   K+ +I   +    +G +AD Q     L +   ++         V  A+ L + I+  Y    L  G ++AG+D+  P ++ + S GG L    +++ GSGS + YG  D  ++  MS+          +  A  RD ASGG   +  +   G
Sbjct:    6 KEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKII--YENPSLLAGLIVAGYDDK-PRVFNI-SLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASGGCIRMSAISRTG 190          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI--IEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GTT +  ++K GV++ AD+RA+ G  ++ ++ +KI  I  N Y  G  AG AAD +     +  K +LH+L+  ++  V  A  +L  +L+ Y+G  +S   ++ G D  GP L+ +   G   +    ++GSGS  A  V ++ YK DM+           I      D  SG    V  + P+G
Sbjct:   34 GTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCG--AGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQG-HISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSG 216          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 2
Query:   86 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 574
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM
Sbjct:   28 DFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   86 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 574
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L   R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   86 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 574
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L   R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 574
            GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 53/194 (27.32%), Postives = 87/194 (44.85%), Query Frame = 2
Query:  107 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWK 688
            +  L    GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M++          I      D  SGG      +   G K
Sbjct:   31 RVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDACVITAGGAK 223          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 48/163 (29.45%), Postives = 82/163 (50.31%), Query Frame = 2
Query:   86 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 574
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ +M
Sbjct:   28 DFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEM 189          
The following BLAST results are available for this feature:
BLAST of CK936100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB6_DICDI9.802e-1531.35Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB10_HUMAN1.280e-1429.02Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSB6_ENCCU1.672e-1429.63Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSB7_DICDI3.725e-1430.11Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7_BOVIN4.865e-1430.06Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_RAT8.298e-1430.06Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE8.298e-1430.06Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_HUMAN1.084e-1331.08Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB10_RAT1.084e-1327.32Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB7_PIG1.415e-1329.45Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004386_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936100 ID=CK936100; Name=CK936100; organism=Citrus sinensis; type=EST; length=708bp
TTCTCCTTTTTTCGAAACAGGCGACGAGCTCTGTCCTGAGTTATCCGCTG
CACCATCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAG
GACACTAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTT
TATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGG
GAGGCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCT
TACATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCA
CAGAAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTA
GAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCT
TATCGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGA
GACTGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAG
GAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTG
GACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGC
TAGAAGAGCTATTTATCATGCGACACCCAGAGATGCAGCCAGTGGTGGTG
TTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGT
GATGATGT
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