CK936100

Overview
NameCK936100
Unique NameCK936100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 55/193 (28.50%), Postives = 88/193 (45.60%), Query Frame = 2
Query:  122 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKL 694
            HA+  GTT    +F++GV++ AD+RA+    ++ +  +KI  I P +    AG AAD +   R       LH L+  R   V   +++L   L+ Y+G  +    ++ G D TGP LY V   G   +    ++GSG   A  VL+  ++ +M++          I      D  SGG      +   G K L
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGY-VGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVITAAGAKML 225          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 54/191 (28.27%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  122 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWK 688
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M++          I      D  SGG      +   G K
Sbjct:   34 HARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAK 223          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   95 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK 565
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYK 182          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   80 DFDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 574
            DF+ +Q++           KAT   + GTT +  I K+ +++ AD+RA+ G  I+ ++ KK+  I+P +    AG AAD +F    +     LH L   R+  V  A  +L   L+ Y+G  +    ++ G+D  GP L+ + + G   K    ++GSGS  A  VL++ Y+ D+
Sbjct:   11 DFEYYQRNLLLQEKGFPTPKAT---STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQG-HIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDL 181          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   95 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK 565
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYK 182          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB_STRCO (Proteasome subunit beta OS=Streptomyces coelicolor GN=prcB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 58/205 (28.29%), Postives = 102/205 (49.76%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM---GLSVGTMIAGWD-ETGPG-LYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGG--VASVYY-----VGPNGWKKLSGDD 706
            GTT +A  F  GV++A D RA+MG  I+ + ++K+   + Y    +AG A       +   ++    E     ++S+ G +  L+ ++ S  GM   GL+V  + AG+D + G G ++  D  GGR +   F + GSGS +A G +   ++ D++           +Y A   D+A+GG  VA   Y     +  +G+++L  D+
Sbjct:   53 GTTIVAVTFPGGVVLAGDRRATMGNMIAQRDIEKVFPADEYSAVGIAGTAGLAVEMVKLFQLELEHFEKVEGAQLSLEGKANRLSTMIRSNLGMAMQGLAVVPLFAGYDVDRGRGRIFSYDVTGGRSEERHFATTGSGSVFARGAMKKLFRDDLTEEQATTLVVQALYDAADDDSATGGPDVARRIYPIITVITEDGFRRLGEDE 257          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 51/189 (26.98%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKL 694
            GT+ +A  FK+GV++ ADSR + G YI+++   K+  ++  +    +G AAD Q     +     L+        + T AS +   + Y  +   L+ G ++AG+D+   G  Y    GG +    +++ GSGS + YG  D  ++ +MS           +  A   D +SGGV  +  +   G ++L
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS-VFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205          
The following BLAST results are available for this feature:
BLAST of CK936100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB10_BOVIN1.415e-1328.50Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB10_MOUSE1.849e-1328.27Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB7B_ARATH7.025e-1333.76Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7_SCHPO9.175e-1330.29Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB7A_ARATH9.175e-1333.76Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB_STRCO1.565e-1228.29Proteasome subunit beta OS=Streptomyces coelicolor... [more]
PSB6_YEAST3.486e-1226.98Proteasome component PRE3 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004386_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936100 ID=CK936100; Name=CK936100; organism=Citrus sinensis; type=EST; length=708bp
TTCTCCTTTTTTCGAAACAGGCGACGAGCTCTGTCCTGAGTTATCCGCTG
CACCATCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAG
GACACTAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTT
TATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGG
GAGGCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCT
TACATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCA
CAGAAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTA
GAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCT
TATCGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGA
GACTGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAG
GAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTG
GACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGC
TAGAAGAGCTATTTATCATGCGACACCCAGAGATGCAGCCAGTGGTGGTG
TTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGT
GATGATGT
back to top