CK936275

Overview
NameCK936275
Unique NameCK936275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.330e-32
Identity = 62/129 (48.06%), Postives = 94/129 (72.87%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R+G G+D+H+L+    LIIGGI +P+E+G   HSD DVLLH + DAI+GA+G  DIG  FPD+D  +K A S+  + E  R ++  G+++GNLDAT+I ++PK++PY E ++  ++ELL A+P+ VN+K
Sbjct:    3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHAEPSQVNVK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.330e-32
Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R+GHG+D+H+L     LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L    GY IGNLDAT++ QRPKL+P+   +R N++  L AD   +N+K
Sbjct:    2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQRPKLAPHIPQMRENIARALKADADRINVK 130          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.330e-32
Identity = 64/129 (49.61%), Postives = 90/129 (69.77%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R+GHGFD+H      PLIIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+D  +KGA S   ++EA+R + + GY +GN+D T+I Q PK+ P+   +R N++E LG     VN+K
Sbjct:    2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQAPKMLPHAPQMRINIAEDLGIHMDEVNVK 130          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_BACSU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus subtilis GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.330e-32
Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ + GY +GN+D T+I Q+PK+ PY E +R  ++E L AD + VN+K
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_BACA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.330e-32
Identity = 65/130 (50.00%), Postives = 92/130 (70.77%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA G  DIG+ FPD+DP++K A S   ++    ++ E GY +GN+D T+I Q+PK++P+ + +R  ++E L AD + VN+K
Sbjct:    2 FRIGQGFDVHQLTEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAAGEGDIGKHFPDTDPEFKDADSFKLLQHVWNIVKEKGYVLGNIDCTIIAQKPKMAPHIDAMRKRIAEGLEADVSQVNVK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_THEEB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = 2
Query:  143 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            +  R+G+G+D+HRL P  PLI+GGI + H  G   HSD DVL H ++DA+LGAL L DIG  FP SDP+W GA S V + +   L+ E G+ +GN+DA ++ +RPKL PY + +R  L+  LG D   +++K
Sbjct:    2 MKIRIGNGYDIHRLVPERPLILGGIRLEHACGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPSDPQWAGADSQVLLAKVAALIAERGWRVGNIDAVVVAERPKLKPYLDPMRDRLATTLGIDRDQISIK 133          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R G G+D+HR+  G  +I+GG+ VP E G E HSD DVL H + DAILGA  L DIG  FPDSDP+WKG  S VF++ A  L  + GY I N+D+T+IL+RPKL  +++TIR  L+E L  D   V++K
Sbjct:    5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILERPKLKDFRQTIRERLAETLELDVDRVSVK 133          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_SHEPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 2
Query:  143 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            +  R+GHGFD+H+     PLI+GGI VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY + NLD T+I Q PK++P+ E IR  L+E L ++   +N+K
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGITVPYEVGLIAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYKLAMDMGYSLSNLDVTVIAQAPKMAPHIEAIRAVLAEDLASEICDINVK 132          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q PK+ P+ + IR  LS  L +D   +N+K
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAINVK 132          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_DECAR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 65/130 (50.00%), Postives = 90/130 (69.23%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FRVG G+D+H+L  G  LI+GG+ +PH  G   HSD D LLH + DA+LGA+ L DIG+ FPD+DP++KGA S V ++ AV L+ E G+   N+DATLI Q+PKL+P+   +  N++  LG  P  VN+K
Sbjct:    3 FRVGQGYDVHKLVDGRKLILGGVEIPHPTGLLGHSDADALLHAITDALLGAVALGDIGRHFPDTDPRYKGADSRVLLRAAVALLAERGWRPVNVDATLIAQQPKLAPHAVAMVANVAADLGISPDCVNIK 132          
The following BLAST results are available for this feature:
BLAST of CK936275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_LISIN1.330e-3248.062-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOUR1.330e-3250.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWT91.330e-3249.612-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSU1.330e-3250.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACA21.330e-3250.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEEB1.737e-3246.972-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SOLUE1.737e-3251.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEPA1.737e-3250.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP1.737e-3250.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DECAR1.737e-3250.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_E12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936275 ID=CK936275; Name=CK936275; organism=Citrus sinensis; type=EST; length=539bp
CCGCGTCCCCAATTTCGAAAAAAAACATCTCCGCACAACACAGTCAACGT
CGCTGCCTCGTATTTNNNNNNCAGCTGCAGCCATTTCTTCCATCGAAGTT
AAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTT
TCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTC
TGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCAC
TCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGC
ATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGT
GGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATG
GATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCA
AAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTG
AACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAG
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