FE896219

Overview
NameFE896219
Unique NameFE896219
TypeEST
OrganismCitrus trifoliata ()
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.289e-47
Identity = 105/147 (71.43%), Postives = 112/147 (76.19%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L  LGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT F
Sbjct:  122 RNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 263          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.289e-47
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS +G L  LGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  DL YPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW +AT F
Sbjct:  121 RNG--VKFGEAVWFKAGSQIFS-DGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNF 263          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.289e-47
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS +G L  LGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  DL YPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW +AT F
Sbjct:  121 RNG--VKFGEAVWFKAGSQIFS-DGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNF 263          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 8.214e-47
Identity = 105/147 (71.43%), Postives = 112/147 (76.19%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L  LGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADD   FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct:  119 RNG--VKFGEAVWFKKGSQIFS-EGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 260          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.073e-46
Identity = 100/147 (68.03%), Postives = 112/147 (76.19%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      F+ EG L  LGNP+LVHAQSILA+   QV+LMG VEG+R+ G P +GE  D +YPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +P  NNAW YAT F
Sbjct:  120 KNG--VKFGEAVWFKAGSQIFA-EGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVEDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNF 261          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.121e-46
Identity = 99/147 (67.35%), Postives = 112/147 (76.19%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L  LG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE  D +YPGG  FDPLGLADDP  FA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT F
Sbjct:  133 RNG--VKFGEAVWFKAGAQIFS-EGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNF 274          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 5.324e-46
Identity = 98/140 (70.00%), Postives = 110/140 (78.57%), Query Frame = -1
Query:    3 FKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 419
            F E VWF      FS EG L  LGNP+LVHAQ+I+A    QV+LMGL+EG+R+NG P  GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHL NP  NNA+ +ATKF
Sbjct:  113 FGEAVWFKAGAQIFS-EGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPA-GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKF 249          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 5.324e-46
Identity = 99/142 (69.72%), Postives = 111/142 (78.17%), Query Frame = -1
Query:    3 VDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 425
            V F EPVWF      FS EG L  LG+P L+HAQ+I+A L  QVVLMGL+EG+R+NG P  GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NL DHL +P  NNA+  ATKF
Sbjct:  114 VKFGEPVWFKAGAQIFS-EGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPA-GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKF 252          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 5.324e-46
Identity = 101/151 (66.89%), Postives = 110/151 (72.85%), Query Frame = -1
Query:    3 P*SFXRNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 455
            P  F RNG  V F E VW       FS EG L  LGNP+LVHAQSILA+   QV+LMG VEG+R+ G P     + LYPGG  FDPLGLA+DP  FAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENL DHL +PV NNAW YAT F
Sbjct:  117 PELFARNG--VKFGEAVWLKAGSQIFS-EGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGS-FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNF 263          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.954e-46
Identity = 102/147 (69.39%), Postives = 110/147 (74.83%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L  LGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  F ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENL DH+ +PV NNAW YAT F
Sbjct:  120 RNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNF 261          
The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB25_TOBAC6.289e-4771.43Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_ARATH6.289e-4768.03Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.289e-4768.03Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_HORVU8.214e-4771.43Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_POLMU1.073e-4668.03Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2A_PYRPY3.121e-4667.35Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2_CHLRE5.324e-4670.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO5.324e-4669.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP5.324e-4666.89Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_MAIZE6.954e-4669.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank description1SSH127 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH127, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bp
ACAAACTTGGTAGCATAGACCCAAGCATTGTTGGCAACAGGGTTCTCAAG
GTGGTCCAGGAGGTTCTCCAAGGGACCTTTGCCTGTCACAATAGCTTGGA
CAAAGAAACCAAACATGGAAAACATAGCTAGCCTGCCATTCTTGATTTCC
TTCACCTTGAGTTCAGCAAACGTAACAGGATCATCAGCAAGGCCAAGGGG
ATCAAAATATTGGCCACCAGGGTAGAGGTCGTTTCCTTCTCCGACACCAG
GGAGGCCATTGATACGGAAACCCTCAACGAGCCCCATGAGGACAACCTGG
AATCCCAGGACAGCCAGAATGCTTTGAGCATGAACAAGGTTGGGGTTTCC
CAANTANTCAAGGNCACCTTCTTGAGAAAATCTTGANCTCCANCNTTNGA
ACCAAACCGGTTCCTTGAAGTCTACCCTAAANCCATTTCTCNAGAAACTT
CAGGG
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