FE896219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 6.289e-47 Identity = 105/147 (71.43%), Postives = 112/147 (76.19%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 RNG V F E VWF FS EG L LGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLA+DP FAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT F Sbjct: 122 RNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 263
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 6.289e-47 Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 RNG V F E VWF FS +G L LGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE DL YPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW +AT F Sbjct: 121 RNG--VKFGEAVWFKAGSQIFS-DGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNF 263
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 6.289e-47 Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 RNG V F E VWF FS +G L LGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE DL YPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW +AT F Sbjct: 121 RNG--VKFGEAVWFKAGSQIFS-DGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNF 263
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 8.214e-47 Identity = 105/147 (71.43%), Postives = 112/147 (76.19%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 RNG V F E VWF FS EG L LGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLADD FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F Sbjct: 119 RNG--VKFGEAVWFKKGSQIFS-EGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 260
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 1.073e-46 Identity = 100/147 (68.03%), Postives = 112/147 (76.19%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 +NG V F E VWF F+ EG L LGNP+LVHAQSILA+ QV+LMG VEG+R+ G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +P NNAW YAT F Sbjct: 120 KNG--VKFGEAVWFKAGSQIFA-EGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVEDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNF 261
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 3.121e-46 Identity = 99/147 (67.35%), Postives = 112/147 (76.19%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 RNG V F E VWF FS EG L LG+P L+HAQSILA+ QV+LMG +EG+R+ G P +GE D +YPGG FDPLGLADDP FA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT F Sbjct: 133 RNG--VKFGEAVWFKAGAQIFS-EGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNF 274
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 5.324e-46 Identity = 98/140 (70.00%), Postives = 110/140 (78.57%), Query Frame = -1 Query: 3 FKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 419 F E VWF FS EG L LGNP+LVHAQ+I+A QV+LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF Sbjct: 113 FGEAVWFKAGAQIFS-EGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPA-GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKF 249
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 5.324e-46 Identity = 99/142 (69.72%), Postives = 111/142 (78.17%), Query Frame = -1 Query: 3 VDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 425 V F EPVWF FS EG L LG+P L+HAQ+I+A L QVVLMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NL DHL +P NNA+ ATKF Sbjct: 114 VKFGEPVWFKAGAQIFS-EGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPA-GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKF 252
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 5.324e-46 Identity = 101/151 (66.89%), Postives = 110/151 (72.85%), Query Frame = -1 Query: 3 P*SFXRNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 455 P F RNG V F E VW FS EG L LGNP+LVHAQSILA+ QV+LMG VEG+R+ G P + LYPGG FDPLGLA+DP FAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENL DHL +PV NNAW YAT F Sbjct: 117 PELFARNG--VKFGEAVWLKAGSQIFS-EGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGS-FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNF 263
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 6.954e-46 Identity = 102/147 (69.39%), Postives = 110/147 (74.83%), Query Frame = -1 Query: 3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440 RNG V F E VWF FS EG L LGNP+L+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP F ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENL DH+ +PV NNAW YAT F Sbjct: 120 RNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNF 261 The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bpback to top |