FE896219

Overview
NameFE896219
Unique NameFE896219
TypeEST
OrganismCitrus trifoliata ()
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 9.082e-46
Identity = 96/136 (70.59%), Postives = 109/136 (80.15%), Query Frame = -1
Query:    3 VWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 407
            +WF    + F Q+G L  LGNP+L+HAQ+I+A L  QVVLMGLVEG+R+NG P  GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHL NP  NNA+ YATKF
Sbjct:  138 IWFKAGAAIF-QDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPA-GEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKF 270          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 9.082e-46
Identity = 102/147 (69.39%), Postives = 109/147 (74.15%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E  WF      FS EG L  LGN +L+HAQSILA+   QV+LMG VEG+RI G P +GE  D +YPGG  FDPL LADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL  PV NNAW YAT F
Sbjct:  100 RNG--VKFGEASWFKAGSQIFS-EGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNF 241          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.549e-45
Identity = 103/147 (70.07%), Postives = 111/147 (75.51%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L  LGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D LYPGG  FDPLGLA+ P  FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENL DHL +PV NNAW YAT F
Sbjct:   83 RNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNF 224          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.023e-45
Identity = 101/147 (68.71%), Postives = 112/147 (76.19%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L  LGNP+LVHAQSIL++   QV+LMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP   AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct:  119 RNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP-LGEIVDPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 260          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 6.508e-44
Identity = 101/147 (68.71%), Postives = 108/147 (73.47%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E VWF      FS EG L   GNP+LVHAQSILA+   QVVLMG VEG+ + G   +GE  D LY GG  FDPLGL DDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT F
Sbjct:  119 RNG--VKFGEGVWFKAGSQIFS-EGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-GRLGEVVDPLYLGGS-FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNF 260          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 8.500e-44
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            RNG  V F E  WF      FS +G L  LGNP+LVHAQS+LA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+ P  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+L DH+ +PV NNAW+ AT F
Sbjct:  121 RNG--VKFGEAGWFKAGSQIFS-DGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGP-LGEIVDPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNF 262          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.772e-41
Identity = 87/121 (71.90%), Postives = 95/121 (78.51%), Query Frame = -1
Query:    3 LXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 362
            L  LGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  DL YPGG  FDPL    DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGS-FDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 120          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.315e-41
Identity = 91/143 (63.64%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    3 VDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG--VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 425
            V F EPVWF      F+ +G L  LGN +L+HAQSI+A L  QVVLMGL E +R NG     + + + LYPGG  FDPLGLADDP TFAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHL +P  N A+  ATKF
Sbjct:  109 VQFGEPVWFKAGAQIFA-DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKF 249          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.500e-40
Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = -1
Query:    3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT F
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 112          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.559e-40
Identity = 88/114 (77.19%), Postives = 95/114 (83.33%), Query Frame = -1
Query:    3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 261          
The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2_DUNSA9.082e-4670.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SOYBN9.082e-4669.39Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PEA1.549e-4570.07Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_APIGR2.023e-4568.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE6.508e-4468.71Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_WHEAT8.500e-4468.03Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.772e-4171.90Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_DUNTE2.315e-4163.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2D_SOLLC1.500e-4078.07Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.559e-4077.19Chlorophyll a-b binding protein 1C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank description1SSH127 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH127, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bp
ACAAACTTGGTAGCATAGACCCAAGCATTGTTGGCAACAGGGTTCTCAAG
GTGGTCCAGGAGGTTCTCCAAGGGACCTTTGCCTGTCACAATAGCTTGGA
CAAAGAAACCAAACATGGAAAACATAGCTAGCCTGCCATTCTTGATTTCC
TTCACCTTGAGTTCAGCAAACGTAACAGGATCATCAGCAAGGCCAAGGGG
ATCAAAATATTGGCCACCAGGGTAGAGGTCGTTTCCTTCTCCGACACCAG
GGAGGCCATTGATACGGAAACCCTCAACGAGCCCCATGAGGACAACCTGG
AATCCCAGGACAGCCAGAATGCTTTGAGCATGAACAAGGTTGGGGTTTCC
CAANTANTCAAGGNCACCTTCTTGAGAAAATCTTGANCTCCANCNTTNGA
ACCAAACCGGTTCCTTGAAGTCTACCCTAAANCCATTTCTCNAGAAACTT
CAGGG
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