FE896219

Overview
NameFE896219
Unique NameFE896219
TypeEST
OrganismCitrus trifoliata ()
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.559e-40
Identity = 88/114 (77.19%), Postives = 95/114 (83.33%), Query Frame = -1
Query:    3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 261          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.366e-40
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = -1
Query:    3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT F
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNF 263          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.366e-40
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = -1
Query:    3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT F
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNF 263          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.230e-34
Identity = 88/140 (62.86%), Postives = 97/140 (69.29%), Query Frame = -1
Query:    3 FKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 419
            F E VWF      FS EG L  LGNP+LVHAQSILA+   +V+LMG VEG+RI   P +GE  D LYPG   FD LGLA+D   FAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENL DHL   V NNA    T F
Sbjct:  129 FGEAVWFKAGAQIFS-EGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP-LGEVTDPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNF 264          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.096e-30
Identity = 72/107 (67.29%), Postives = 84/107 (78.50%), Query Frame = -1
Query:   27 LVHAQSILAVLGFQVVLMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 338
            L+HA+S+LA+L  QV+LMG VEG+R  N  PG  GE  D LYPGG  FDPLGLADDP TF ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN L HL++P A+N
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHN 110          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.105e-22
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = -1
Query:   27 ILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 320
            +LAV+  +VVL+G  E +RI    G+   + L+PGG  FDPLGLA DP   A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL +P  NN
Sbjct:  172 VLAVVA-EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.842e-20
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = -1
Query:   27 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 287
            +GL +GF        G GN  YPGG +F+PLG   D  +  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NLLDH+ +PV NN
Sbjct:  188 LGLEKGFG-------GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.018e-20
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  168 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTF 440
            +NG  V F E VWF    S+  QEG L  LGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D LYPGG  FDPLGLA+DP  F
Sbjct:  119 KNG--VKFGEAVWFKA-GSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP-LGEGLDQLYPGGA-FDPLGLAEDPEAF 205          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.118e-19
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = -1
Query:   27 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 242
            G G+  YPGG  F+PLG   D  +  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct:  194 GSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.193e-17
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = -1
Query:   36 SILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 323
            SI  ++  +V+++G +E F+ N    +     LYPGG++FDPLGLA DPV  A+L++ EIK+ RLAM    GF VQA  TGKGPL N   HL +P+
Sbjct:  184 SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2A_SOLLC2.559e-4077.19Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC4.366e-4076.32Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.366e-4076.32Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2_MALDO1.230e-3462.86Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_EUGGR4.096e-3067.29Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH4.105e-2259.18Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_PEA3.842e-2051.72Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_SILPR5.018e-2063.04Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB13_SOLLC1.118e-1959.72Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4B_ARATH5.193e-1747.92Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank description1SSH127 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH127, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bp
ACAAACTTGGTAGCATAGACCCAAGCATTGTTGGCAACAGGGTTCTCAAG
GTGGTCCAGGAGGTTCTCCAAGGGACCTTTGCCTGTCACAATAGCTTGGA
CAAAGAAACCAAACATGGAAAACATAGCTAGCCTGCCATTCTTGATTTCC
TTCACCTTGAGTTCAGCAAACGTAACAGGATCATCAGCAAGGCCAAGGGG
ATCAAAATATTGGCCACCAGGGTAGAGGTCGTTTCCTTCTCCGACACCAG
GGAGGCCATTGATACGGAAACCCTCAACGAGCCCCATGAGGACAACCTGG
AATCCCAGGACAGCCAGAATGCTTTGAGCATGAACAAGGTTGGGGTTTCC
CAANTANTCAAGGNCACCTTCTTGAGAAAATCTTGANCTCCANCNTTNGA
ACCAAACCGGTTCCTTGAAGTCTACCCTAAANCCATTTCTCNAGAAACTT
CAGGG
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