FE896219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 2.559e-40 Identity = 88/114 (77.19%), Postives = 95/114 (83.33%), Query Frame = -1 Query: 3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT F Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 261
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 4.366e-40 Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = -1 Query: 3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT F Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNF 263
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 4.366e-40 Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = -1 Query: 3 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 341 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT F Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNF 263
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.230e-34 Identity = 88/140 (62.86%), Postives = 97/140 (69.29%), Query Frame = -1 Query: 3 FKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 419 F E VWF FS EG L LGNP+LVHAQSILA+ +V+LMG VEG+RI P +GE D LYPG FD LGLA+D FAELKVKE+KNGRLAMFSMFGFFVQAIV+ K LENL DHL V NNA T F Sbjct: 129 FGEAVWFKAGAQIFS-EGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP-LGEVTDPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNF 264
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.096e-30 Identity = 72/107 (67.29%), Postives = 84/107 (78.50%), Query Frame = -1 Query: 27 LVHAQSILAVLGFQVVLMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 338 L+HA+S+LA+L QV+LMG VEG+R N PG GE D LYPGG FDPLGLADDP TF ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN L HL++P A+N Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHN 110
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.105e-22 Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = -1 Query: 27 ILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 320 +LAV+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P NN Sbjct: 172 VLAVVA-EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.842e-20 Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = -1 Query: 27 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 287 +GL +GF G GN YPGG +F+PLG D + ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NLLDH+ +PV NN Sbjct: 188 LGLEKGFG-------GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 5.018e-20 Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = -1 Query: 168 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTF 440 +NG V F E VWF S+ QEG L LGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +GEG D LYPGG FDPLGLA+DP F Sbjct: 119 KNG--VKFGEAVWFKA-GSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP-LGEGLDQLYPGGA-FDPLGLAEDPEAF 205
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.118e-19 Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = -1 Query: 27 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 242 G G+ YPGG F+PLG D + ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN Sbjct: 194 GSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.193e-17 Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = -1 Query: 36 SILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 323 SI ++ +V+++G +E F+ N + LYPGG++FDPLGLA DPV A+L++ EIK+ RLAM GF VQA TGKGPL N HL +P+ Sbjct: 184 SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276 The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bpback to top |