FE896219

Overview
NameFE896219
Unique NameFE896219
TypeEST
OrganismCitrus trifoliata ()
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.577e-16
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = -1
Query:   36 SILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 323
            SI  ++  +V+++G +E F+ N    +     LYPGG++FDPLGLA DP   A+L++ EIK+ RLAM +  GF VQA  TGKGPL N   HL +P+
Sbjct:  187 SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = -1
Query:   27 YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLENPVANN 224
            YPGG  FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENL  HL +P  NN
Sbjct:  167 YPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = -1
Query:   27 YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLENPVANN 224
            YPGG  FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENL  HL +P  NN
Sbjct:  168 YPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = -1
Query:   39 FRINGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 269
            F  N L G   G   YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL +P
Sbjct:  184 FPNNKLTGTDVG---YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = -1
Query:   39 FRINGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 269
            F  N L G   G   YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL +P
Sbjct:  184 FPNNKLTGTDVG---YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB4A_ARATH2.577e-1646.88Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB121_HORVU3.150e-1461.19Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.150e-1461.19Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC1.324e-1250.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.324e-1250.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank description1SSH127 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH127, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bp
ACAAACTTGGTAGCATAGACCCAAGCATTGTTGGCAACAGGGTTCTCAAG
GTGGTCCAGGAGGTTCTCCAAGGGACCTTTGCCTGTCACAATAGCTTGGA
CAAAGAAACCAAACATGGAAAACATAGCTAGCCTGCCATTCTTGATTTCC
TTCACCTTGAGTTCAGCAAACGTAACAGGATCATCAGCAAGGCCAAGGGG
ATCAAAATATTGGCCACCAGGGTAGAGGTCGTTTCCTTCTCCGACACCAG
GGAGGCCATTGATACGGAAACCCTCAACGAGCCCCATGAGGACAACCTGG
AATCCCAGGACAGCCAGAATGCTTTGAGCATGAACAAGGTTGGGGTTTCC
CAANTANTCAAGGNCACCTTCTTGAGAAAATCTTGANCTCCANCNTTNGA
ACCAAACCGGTTCCTTGAAGTCTACCCTAAANCCATTTCTCNAGAAACTT
CAGGG
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