FE896220

Overview
NameFE896220
Unique NameFE896220
TypeEST
OrganismCitrus trifoliata ()
Sequence length396
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.435e-24
Identity = 59/136 (43.38%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVMN---------------QGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            R+PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT       + H V+                 G+G T   + G ++C G        R+ +YK YC+  GV  GPNL C
Sbjct:  190 RWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 58/129 (44.96%), Postives = 70/129 (54.26%), Query Frame = 2
Query:   38 GKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            G  +YGRGPIQLTG  NY  AG+AIG D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  QV+ RI +Y+ YC    V PG NL C
Sbjct:  110 GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 59/135 (43.70%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            ++PC  GK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSF TA WFWMT   P  +                      G+G     ING +ECG  +  +V  RI +YK YC+  GV    NL C
Sbjct:  184 QWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDC 318          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 59/131 (45.04%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   38 GKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC*N 367
            G  YYGRGPIQLTG  NY  AGKAI  D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q A+V+ RI YY+   +   V PG NL C N
Sbjct:  117 GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYN 247          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 60/129 (46.51%), Postives = 71/129 (55.04%), Query Frame = 2
Query:   47 YYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQKINGAVECG-GKQPAQVQARIEYYKDYCNKFGVDPGPNLSC*N 367
            YYGRGPIQLTG  NY AAG A+G D +  P+ V+ D VVSFKTA+WFWMT      + H V+                 G+G     ING +ECG G+  A V  RI YYK YC+  G   G NL C N
Sbjct:  128 YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVD-RIGYYKRYCDMLGAGYGSNLDCYN 255          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 57/135 (42.22%), Postives = 69/135 (51.11%), Query Frame = 2
Query:   23 YPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWM------TNVHPVMN---------------QGFGATIQKINGAVECG-GKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            Y CV GK Y GRGPIQL+ N NYG  G  +    L+ PE V  DPV+SFKTA+WFWM       + H V+                 G+G     ING +ECG G   A  + RI +YK YC+  G   G NL C
Sbjct:  189 YQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 55/128 (42.97%), Postives = 67/128 (52.34%), Query Frame = 2
Query:   47 YYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC*N 367
            YYGRGPIQLT   NY  AG AIG + +  P+ VA D  +SFKTA+WFWMT      + H V+                 G+G     ING +ECG  +   V+ RI YY+ YC    V PG NL C N
Sbjct:  119 YYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYN 246          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 56/128 (43.75%), Postives = 65/128 (50.78%), Query Frame = 2
Query:   47 YYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC*N 367
            YYGRGPIQLT   NY  AG AI  D +  P+ VA D  +SFKTA+WFWMT      + H V+                 G G     ING +ECG    A V+ RI YY+ YC    V PG NL C N
Sbjct:  119 YYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYN 246          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 54/127 (42.52%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   47 YYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP-------VMNQ--------------GFGATIQKINGAVECG-GKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            YYGRGPIQLT   NY  AG A+G D +  P+ V+ DPVV+F+TA+WFWMT   P       + NQ              G+G     ING  ECG G      + R+ YYK YC+ F V  G N++C
Sbjct:  121 YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.009e-20
Identity = 60/146 (41.10%), Postives = 70/146 (47.95%), Query Frame = 2
Query:   23 YPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVM---------------NQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC*N--VFADTSL 388
            YPCV    YYGRGP+QL  N NYG  G  +G + L  PE VA DPV+SF+ ALWFWM        + H V+                 GFG     I    EC      + Q RI+YY  YC+   VDPG NL C N   F D  L
Sbjct:  166 YPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDNGL 309          
The following BLAST results are available for this feature:
BLAST of FE896220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI7_ORYSI3.435e-2443.38Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIB_SOLLC9.995e-2444.96Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ9.995e-2443.70Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY1.885e-2245.04Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_ORYSJ1.885e-2246.51Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR1.596e-2142.22Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIQ_TOBAC3.555e-2142.97Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC6.063e-2143.75Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI11_ORYSJ7.919e-2142.52Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR3.009e-2041.10Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank description1SSH128 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH128, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896220 ID=FE896220; Name=FE896220; organism=Citrus trifoliata; type=EST; length=396bp
TTCGAGCGGCCGCCCGGGCAGGTACCCATGTGTTCCCGGAAAGTTCTACT
ACGGCCGTGGACCGATCCAACTCACCGGAAATGGCAACTACGGAGCTGCC
GGAAAAGCTATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAA
GGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAATG
TGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAAAATCAAT
GGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCAT
AGAATATTATAAGGATTATTGCAACAAATTTGGTGTTGATCCTGGCCCAA
ATCTCTCTTGTTAAAATGTTTTCGCCGATACTTCACTGGCTTGTTG
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