GE213229

Overview
NameGE213229
Unique NameGE213229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  232 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            M   E T++MVKPDGVQRGL+GDI+SRFE            Q   +LA EHY +   KPFF +L E++   P+
Sbjct:    1 MADTERTFVMVKPDGVQRGLIGDIVSRFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPV 73          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E T+IM+KPDGVQRGLVG+II RFE               +  AE+HY DL++KPFF  L+EY+   P+
Sbjct:    1 MEHTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  232 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            M   E T+I +KPDGVQRGLVG+II RFE            Q  +DL +EHY DL  +PFF  L++Y+   P+
Sbjct:    1 MANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPV 73          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  232 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRP 447
            M + E T++MVKPDGVQRGLVG+IISRFE            +  ++LA++HY +  +KPFFP L+ ++   P
Sbjct:    1 MVERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGP 72          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDKM_HUMAN (Nucleoside diphosphate kinase, mitochondrial OS=Homo sapiens GN=NME4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  244 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            E T + VKPDGVQR LVGD+I RFE            Q P+ +  EHY+DL  KPF+P LI Y+   P+
Sbjct:   38 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPV 106          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E+T+IM+KPDGVQRGL+G++I RFE               +  AE+HY+DL+SK FF  L++Y+   P+
Sbjct:    1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_HALLT (Nucleoside diphosphate kinase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  244 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            E T++MVKPDGVQRGL+G+I+SRFE            Q  +DLA +HY +   KPFF  L++++   P+
Sbjct:    6 ERTFVMVKPDGVQRGLIGEIVSRFEERGLKLVGGKFMQIDEDLAHQHYGEHEGKPFFDGLVDFITSAPV 74          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E TY+M+KPDGVQRGLVG+II+RFE            +  ++LAE+HY +   KPFF  L+ Y+   P+
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E TY+M+KPDGVQRGLVG+IISRFE            +  +++AE+HY +   KPFF  L++Y+   P+
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E T+IMVKPDGVQRGLVG+IISRFE            Q  ++LAE HY +   KPFF  L+ ++   P+
Sbjct:    1 MERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPV 70          
The following BLAST results are available for this feature:
BLAST of GE213229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NDK_NATPD1.729e-1246.58Nucleoside diphosphate kinase OS=Natronomonas phar... [more]
NDKB_FLABI1.729e-1248.57Nucleoside diphosphate kinase B OS=Flaveria bident... [more]
NDKA_RAT1.729e-1246.58Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_UNCMA2.258e-1245.83Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDKM_HUMAN2.258e-1247.83Nucleoside diphosphate kinase, mitochondrial OS=Ho... [more]
NDK1_ARATH2.258e-1244.29Nucleoside diphosphate kinase 1 OS=Arabidopsis tha... [more]
NDK_HALLT2.949e-1244.93Nucleoside diphosphate kinase OS=Halorubrum lacusp... [more]
NDK_PELTS3.851e-1245.71Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_HELMI3.851e-1245.71Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_CARHZ3.851e-1248.57Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]

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Properties
Property NameValue
Genbank description76 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213229 ID=GE213229; Name=GE213229; organism=Citrus sinensis; type=EST; length=454bp
ATTAGCGTGGTCGCGGCCGAGGTATCATCACCAACTCTGGTTGGGAAGAT
AAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTGCGCA
CCACCAGCCACCTTGCAGCATTCCACCCACAGTCCCATCTTTTCGTAAAA
TTCCCACCATGTCCTCAACGCAAAACAGTTGCTCGCAACTCCAACGAAAC
CGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGGAGA
CTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGCGAC
ATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGACTGGCTTGAAGCT
CTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATAAGGATCTCAATT
CCAAACCATTTTTTCCTAAACTGATTGAGTACCTGCCCGGGCGGCCGCTC
GAAA
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