GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SHIFL (S-adenosylmethionine synthetase OS=Shigella flexneri GN=metK PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = -1 
Query:  262 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 738
            +L   T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  216 WLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SHIF8 (S-adenosylmethionine synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = -1 
Query:  262 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 738
            +L   T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  216 WLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SHIDS (S-adenosylmethionine synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = -1 
Query:  262 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 738
            +L   T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  216 WLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_PSEHT (S-adenosylmethionine synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 82/154 (53.25%), Postives = 107/154 (69.48%), Query Frame = -1 
Query:  262 TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 723
            T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIG+ EP S+ V+++GT K+ +  ++++++E FD RP  +   LDL+R     +L TAAYGHFGR+  +F WE
Sbjct:  221 TKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADKCELQVSYAIGIAEPTSISVETFGTSKLEESRLIELIREHFDLRPYGLIKMLDLER---PIYLPTAAYGHFGRE--EFPWE 369
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_PROM5 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 82/163 (50.31%), Postives = 108/163 (66.26%), Query Frame = -1 
Query:  253 EKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDL----KRGGNGRFLKTAAYGHFGRDDPDFTWEVVK 729
            EKT F +NP+G+FV+GGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AKSIV   LA++  VQ+SYAIGV +P+S+ VD++GT  I    + ++++ +FD RP  +    DL    K+ G   + KTA+YGHFGR+D +  WE V+
Sbjct:  237 EKTRFLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKSIVKAKLAKKAEVQLSYAIGVAKPISILVDTFGTSVISQDNLKELIENNFDLRPAAIIKEFDLRNLPKKLGGEFYRKTASYGHFGRNDLNLPWESVE 399
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_PROM2 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 83/162 (51.23%), Postives = 106/162 (65.43%), Query Frame = -1 
Query:  253 KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLK----RGGNGRFLKTAAYGHFGRDDPDFTWEVVK 726
            KT F +NP+G+FV+GGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AKSIV   LA++  VQ+SYAIGV +P+S+ VD++ TG I    + +++K+ FD RP  +    DL+    + G   F KTA+YGHFGR D D  WE V+
Sbjct:  238 KTRFLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKSIVKAKLAKKAEVQLSYAIGVAKPISILVDTFDTGVISQANLTELIKKYFDLRPAAIIKEFDLRNLPQKMGGKFFRKTASYGHFGRRDLDLPWEKVE 399
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_HAEIG (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittGG) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 84/161 (52.17%), Postives = 111/161 (68.94%), Query Frame = -1 
Query:  256 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 738
            +L ++T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +Q+SYAIGV +P S+ V+++GTGK+ ++ ++ +V+E FD RP  +   LDL +     + +TAAYGHFGR+   F WE V
Sbjct:  216 WLSKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVANELLVSLVREFFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWEKV 371
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_HAEIE (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittEE) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 84/161 (52.17%), Postives = 111/161 (68.94%), Query Frame = -1 
Query:  256 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 738
            +L ++T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +Q+SYAIGV +P S+ V+++GTGK+ ++ ++ +V+E FD RP  +   LDL +     + +TAAYGHFGR+   F WE V
Sbjct:  216 WLSKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVANELLVSLVREFFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWEKV 371
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_HAEI8 (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain 86-028NP) GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 84/161 (52.17%), Postives = 111/161 (68.94%), Query Frame = -1 
Query:  256 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 738
            +L ++T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +Q+SYAIGV +P S+ V+++GTGK+ ++ ++ +V+E FD RP  +   LDL +     + +TAAYGHFGR+   F WE V
Sbjct:  216 WLSKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVANELLVSLVREFFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWEKV 371
[Close]
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 82/160 (51.25%), Postives = 111/160 (69.38%), Query Frame = -1 
Query:  262 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 741
            ++L++ T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AKSIVA GLA RC +Q+SYAIGV +P S+ V+++GTGK+ +  ++K++ ++FD RP  +   LDL +     + +TAAYGHFGR+   F WE
Sbjct:  220 KWLNQHTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKSIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNDTLVKLIYQNFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWE 374
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHIFL1.442e-3853.46S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIF81.442e-3853.46S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIDS1.442e-3853.46S-adenosylmethionine synthetase OS=Shigella dysent... [more]
METK_PSEHT1.442e-3853.25S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_PROM51.442e-3850.31S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM21.442e-3851.23S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_HAEIG1.442e-3852.17S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_HAEIE1.442e-3852.17S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_HAEI81.442e-3852.17S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_HAEDU1.442e-3851.25S-adenosylmethionine synthetase OS=Haemophilus duc... [more]

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Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
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