GE213143

Overview
NameGE213143
Unique NameGE213143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.769e-29
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = -1
Query:   29 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 379
            A KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P
Sbjct:    5 ARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.017e-29
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = -1
Query:   26 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 373
            +RI+KE + L  +P    SA P  ++M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.941e-29
Identity = 87/268 (32.46%), Postives = 135/268 (50.37%), Query Frame = 2
Query:  389 DMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSLG 1117
            + + ++D+D    G G +GL  A ELS+   +Q  ++E++   GGG WL G L + + VR PA   L++L +D+   QDS  +         + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++S ++AA  AL  LG
Sbjct:   26 EFMDFSDSDVIIVGGGPSGLMAAKELSER-GVQTMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQNVLEDLDVDFKRSQDSEGLYVANGPEACSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.941e-29
Identity = 78/254 (30.71%), Postives = 136/254 (53.54%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL-KSIGMIEEVP-----GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            +  +M D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M       +DP  + A+ V+ + GHD       VK + + IG     P     G +++  +  E A++  TREV P + V GM    + GAPRMGP FG M++S ++ A + ++ L
Sbjct:   13 VEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSRA-CQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATGHDCEI----VKVVERKIGPELNTPDGRIQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEMIIEKL 257          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 6.722e-29
Identity = 86/257 (33.46%), Postives = 129/257 (50.19%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSLGQ 1120
            + S++   +   D D    GAG A L  A  L++  ++++ + E+ +S GGG W  G +F  +VV+K A   LDE  I Y E ++ Y V     +        + A    +L N V+ ED++++ G R+ G+V NW    M       +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++S +KAA +AL+ L Q
Sbjct:   13 VESYLESFLKCTDVDVALVGAGPANLVAAKRLAE-ADVRVVLFEKRLSVGGGLWGGGMMFPRIVVQKEACRILDEYDIWYREFEEGYYVADSIEVVAKLTAGAIDA--GAELINLVSVEDVMIREGDRIVGLVINWTAADM---AGIHVDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.779e-29
Identity = 79/250 (31.60%), Postives = 127/250 (50.80%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            ++  M D + + + D    GAG AG+S AY L+K+  ++  + E+ +S GGG      LF  +V+  PA   L E+ I  ++ +  V I  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++S +K A   +K L
Sbjct:   20 IKQTMEDWMNFVENDVVIVGAGPAGMSAAYYLAKH-GLKTLVFERRLSFGGGIGGGAMLFHKLVIESPADEVLKEMNIRLEKVEDGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---AGLHVDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.147e-28
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = -1
Query:   26 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 373
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.147e-28
Identity = 82/245 (33.47%), Postives = 124/245 (50.61%), Query Frame = 2
Query:  392 MITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSLGQ 1120
            +I + + D    G G +GL+CA  L +   ++ A+IE+ +S GGG W  G +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M       +DP  M     V + GHD    A   + ++  G    V G   +    AE  I+  T+EV PG+ VTGM    + G  RMGP FG M++S ++AA L  + LG+
Sbjct:   20 LIDHLEMDAAVIGGGPSGLACAALLGEK-GVKCALIEKKLSIGGGMWGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM---AGLHVDPLTMACTCTVDATGHD----AMIARMVEKKGGALTVKGESFMWAERAESQILAHTKEVFPGLFVTGMAANAVAGECRMGPIFGGMLLSGERAAELVAERLGR 254          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.497e-28
Identity = 60/116 (51.72%), Postives = 79/116 (68.10%), Query Frame = -1
Query:   26 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 373
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.554e-28
Identity = 61/119 (51.26%), Postives = 82/119 (68.91%), Query Frame = -1
Query:   26 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 379
            A KR+ KE+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPL 120          
The following BLAST results are available for this feature:
BLAST of GE213143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
UBC2_MEDSA1.769e-2949.57Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC35_ARATH3.017e-2952.59Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
THI4_NATPD3.941e-2932.46Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_METTH3.941e-2930.71Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_METTP6.722e-2933.46Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_SULAC8.779e-2931.60Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
UBE2N_DICDI1.147e-2852.59Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
THI4_METMJ1.147e-2833.47Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
UBC13_YEAST1.497e-2851.72Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBCB_DICDI2.554e-2851.26Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC6 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213143 ID=GE213143; Name=GE213143; organism=Citrus sinensis; type=EST; length=1162bp
ATTTCGAGGCCGCCCGGGCAGGTACAAGCGGGTCGTCAGGATTTGGGTCA
GTAAGCAACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGG
GCTCCACTGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGA
TGTTTGGGTGGAAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAG
GGATAATCCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATA
TGGACTATCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTT
CAGCCACCGGACCAGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCC
TTGAGTTCCTTCAAAATACGCTTCGAAGCCACATGACGGACATGATCACT
TATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTC
TTGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCG
AACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTC
TCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGG
CATCGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGC
TGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAG
CTCTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGT
TGGTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACAC
AGTCTTGCATGGATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCT
TGTGGCCATGATGGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAG
TATCGGAATGATTGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACT
CTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATG
ATAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCTCCTAGAATGGG
GCCAACATTTGGAGCAATGATGATATCGAGGCAGAAGGCTGCGCATTTGG
CGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTACCTGCCCGGGC
GGCCGCTCGAAA
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