EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BRAJA (Peptide methionine sulfoxide reductase msrB OS=Bradyrhizobium japonicum GN=msrB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.988e-21
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAFYE-GLPGAINRSPDPDGR--RTEITCAACGGHLGHVF-KGEGFKTPTDERHCVNSVSIKCIP 427
            Y CAGCG  L++S  KFDSGCGWP+F +  +   ++   D      RTE+ CA C GHLGHVF  G G   PT  R+C+NS ++K  P
Sbjct:   54 YVCAGCGNVLFESDAKFDSGCGWPSFTQPAVESHVDEERDVSHGMIRTEVLCAKCSGHLGHVFPDGPG---PTGLRYCINSAALKLEP 138          

HSP 2 Score: 41.9726 bits (97), Expect = 1.988e-21
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 3
Query:   48 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            D V K+EE+WR  LSP Q+ +LR+K TE   +GEY
Sbjct:   11 DKVIKSEEQWRRELSPIQYAVLREKATERPFSGEY 45          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_METPP (Peptide methionine sulfoxide reductase msrB OS=Methylibium petroleiphilum (strain PM1) GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.365e-21
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C GC   L+ S TKFD+GCGWP++++ L G  I+R  D      R E+ C  CG HLGHVF       PT ER+C+NS S+
Sbjct:   51 VYHCVGCNAPLFDSGTKFDAGCGWPSYFQPLRGEIIDRVVDRSHGMVRVEVRCQDCGAHLGHVFPDG--PEPTGERYCINSASL 132          

HSP 2 Score: 41.5874 bits (96), Expect = 3.365e-21
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 3
Query:   54 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADG 173
            VQKTE EWRA L P QF + R   TE   TG+Y   + +G
Sbjct:   11 VQKTEAEWRAQLDPMQFEVTRHGATERAFTGKYADHWQEG 50          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VIBPA (Peptide methionine sulfoxide reductase msrB OS=Vibrio parahaemolyticus GN=msrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.252e-19
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY C  C   L+ S  K+DSGCGWP+F   L     R  +       RTEI CA+C  HLGHVF+ +G KT T ER+CVNSVS+
Sbjct:   59 VYACTCCNAPLFISDNKYDSGCGWPSFDAPLNNEAIRYLEDLSHGMVRTEIRCASCDSHLGHVFE-DGPKT-TGERYCVNSVSL 140          

HSP 2 Score: 42.3578 bits (98), Expect = 2.252e-19
Identity = 20/49 (40.82%), Postives = 32/49 (65.31%), Query Frame = 3
Query:    9 PKRLKPNP--MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGE 149
            PK +K  P  +  +   V K++E+WR  LS E+FR+ R++GTEP  +G+
Sbjct:    2 PKIVKKEPKFVEQSGKKVTKSDEQWREQLSDEEFRVCREQGTEPPFSGK 50          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_RALSO (Peptide methionine sulfoxide reductase msrB OS=Ralstonia solanacearum GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.863e-19
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI--NRSPDPDGR-RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +Y+C  CGT L++S TKFD+GCGWP+++  + G +   ++    G  R E+ C  CG HLGHVF  E    PT  R+C+NS ++K
Sbjct:   43 IYHCVCCGTPLFESSTKFDAGCGWPSYFAPINGEVIAEKTDHSHGMVRIEVQCKQCGAHLGHVF--EDGPAPTGLRYCINSAALK 125          

HSP 2 Score: 34.6538 bits (78), Expect = 3.863e-19
Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = 3
Query:   51 SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADG 173
            +++KT+ EWR  LS  ++R+ R+  TE   TG Y   +A G
Sbjct:    2 TIEKTDAEWRDQLSDIEYRVTREAATERPFTGRYWDHWARG 42          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_DROME (Methionine-R-sulfoxide reductase B1 OS=Drosophila melanogaster GN=SelR PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 8.237e-19
Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--------------PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGDAPASS 448
            VY C  C   L+ S TK+DSGCGWPAF + L  G +    D              P+  RTE+ CA C  H+GHVF  E    PT +R+C+NS SI+ +  D   SS
Sbjct:   90 VYQCIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGGNILLLIAHPERIRTEVRCARCNAHMGHVF--EDGPKPTRKRYCINSASIEFVNADPATSS 194          

HSP 2 Score: 35.4242 bits (80), Expect = 8.237e-19
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = 3
Query:   33 MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADG 173
            M   ++ V   +EE R  L+P Q+++ ++ GTE   TG YNK Y  G
Sbjct:   43 MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKG 89          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VARPS (Peptide methionine sulfoxide reductase msrB OS=Variovorax paradoxus (strain S110) GN=msrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.429e-18
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAF-YEGLPGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            Y+C  CG  L++S TKFD+GCGWP+F  E +PGAI    D      RTE  CA CG HLGHVF      T T  R+C+NS S+
Sbjct:   51 YHCICCGAKLFESSTKFDAGCGWPSFSQEAVPGAIRNIVDRSHGMVRTENVCANCGAHLGHVFPDG--PTETGLRYCMNSASL 131          

HSP 2 Score: 33.8834 bits (76), Expect = 1.429e-18
Identity = 16/45 (35.56%), Postives = 25/45 (55.56%), Query Frame = 3
Query:   54 VQKTEEEWRAILS-----PEQFRILRQKGTEPRGTGEYNKLYADG 173
            ++KT+ EW+A+L+     P  F + R   TE   TG+Y   + DG
Sbjct:    5 IEKTDAEWKALLAEKGAEPAAFEVTRHAATERPFTGKYEAHWDDG 49          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PSEMY (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas mendocina (strain ymp) GN=msrB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.864e-18
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            +Y+CA CG AL+ S  K+DSG GWP++++ +   +  S D       R E+ CA C  HLGHVF       PT  R+C+NS+S+K +P D
Sbjct:   44 IYHCACCGEALFDSDAKYDSGSGWPSYFQPINDEVIASLDDYSHGMHRIEVKCAKCDAHLGHVFPDG--PRPTGLRYCINSLSLKLVPRD 131          

HSP 2 Score: 33.8834 bits (76), Expect = 1.864e-18
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 3
Query:   48 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYN 155
            D V K+ + WR  L+ EQF + R  GTE   TG Y+
Sbjct:    2 DKVDKSLDTWREELTDEQFHVCRLGGTERPFTGAYH 37          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB3_MOUSE (Methionine-R-sulfoxide reductase B3, mitochondrial OS=Mus musculus GN=Msrb3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.077e-18
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGDA 436
            +Y C  CGT L+KS TKFDSG GWPAF++ +        D       R E +C+ CG HLGH+F  +    PT +R+C+NS S+   P D+
Sbjct:   76 IYKCVVCGTPLFKSETKFDSGSGWPAFHDVISSEAIEFTDDFSYGMHRVETSCSQCGAHLGHIF--DDGPRPTGKRYCINSASLSFTPADS 164          

HSP 2 Score: 29.261 bits (64), Expect = 3.077e-18
Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 3
Query:   63 TEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            +++E R  L+P Q+ + ++KGTE    GEY
Sbjct:   39 SQQELRKRLTPLQYHVTQEKGTESAFEGEY 68          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_POLNA (Peptide methionine sulfoxide reductase msrB OS=Polaromonas naphthalenivorans (strain CJ2) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.144e-18
Identity = 42/87 (48.28%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAF-YEGLPGAINRSPDP--DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIP 427
            Y C  C   L+ S TKFD+GCGWP+F  E   GAI    D      RTE  CA CG HLGHVF      TPT  R+C+NS S+   P
Sbjct:   51 YRCICCDAELFDSSTKFDAGCGWPSFSQEVKEGAIEEHVDKAHGMTRTETVCANCGAHLGHVFPDG--PTPTGLRYCMNSASLDFKP 135          

HSP 2 Score: 37.3502 bits (85), Expect = 3.144e-18
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 3
Query:   54 VQKTEEEWRAILS-----PEQFRILRQKGTEPRGTGEYNKLYADG 173
            +QKT+ EW+A+L+     P  F + R   TE   TG+Y   YA+G
Sbjct:    5 IQKTDAEWKALLTEKGAEPVAFNVTRHAATERPFTGKYEDNYAEG 49          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SACD2 (Peptide methionine sulfoxide reductase msrB OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.144e-18
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            Y C  C   L++S TK+DSG GWP+F++ + G A+    D      R E+ C  CG HLGHVF  +G K PT  R+C+NS SI+
Sbjct:   46 YLCRCCAEPLFESATKYDSGSGWPSFFQPIKGDAVGEIKDTSHGMVRVEVVCHNCGCHLGHVFP-DGPK-PTGLRYCINSASIQ 127          

HSP 2 Score: 41.9726 bits (97), Expect = 3.144e-18
Identity = 20/36 (55.56%), Postives = 24/36 (66.67%), Query Frame = 3
Query:   45 ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            +D  +K +E WR  L  EQFRI R+KGTE   TGEY
Sbjct:    2 SDLTKKDDEYWRDKLDAEQFRICREKGTERPFTGEY 37          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_BRAJA1.988e-2147.73Peptide methionine sulfoxide reductase msrB OS=Bra... [more]
MSRB_METPP3.365e-2147.62Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_VIBPA2.252e-1950.00Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_RALSO3.863e-1943.53Peptide methionine sulfoxide reductase msrB OS=Ral... [more]
MSRB_DROME8.237e-1941.12Methionine-R-sulfoxide reductase B1 OS=Drosophila ... [more]
MSRB_VARPS1.429e-1850.60Peptide methionine sulfoxide reductase msrB OS=Var... [more]
MSRB_PSEMY1.864e-1842.22Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB3_MOUSE3.077e-1842.86Methionine-R-sulfoxide reductase B3, mitochondrial... [more]
MSRB_POLNA3.144e-1848.28Peptide methionine sulfoxide reductase msrB OS=Pol... [more]
MSRB_SACD23.144e-1845.24Peptide methionine sulfoxide reductase msrB OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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