EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB2_DANRE (Methionine-R-sulfoxide reductase B2, mitochondrial OS=Danio rerio GN=msrb2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.429e-13
Identity = 36/95 (37.89%), Postives = 48/95 (50.53%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEG--------LPGAINRSPDPD--GRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIP 427
            +Y+C  C + L+ S  K+D+G GWP+F E             I R PD       TE+ C  C  HLGHVF  E    PT +R C+NSV++   P
Sbjct:   85 MYHCVCCDSPLFSSEAKYDAGAGWPSFCEAHGTWEKDESHANIVRRPDNSLGSTGTEVICKHCDAHLGHVF--EDGPDPTGQRFCINSVALNFKP 177          

HSP 2 Score: 31.187 bits (69), Expect = 2.429e-13
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query:   72 EWRAILSPEQFRILRQKGTEPRGTGEY 152
            +W+  LSPEQ+ + R+KGTE   +G Y
Sbjct:   51 DWQRKLSPEQYVVTREKGTEVPFSGIY 77          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_HAHCH (Peptide methionine sulfoxide reductase msrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGDAPA 442
            T E+ R  R  G ++   G         VY C  CG  L+ S  K+DSGCGWP+F+  +    I    D      RTEI C+ C  HLGHVF  +    PT +R+CVNS S++    D  A
Sbjct:   16 TDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENKYDSGCGWPSFWAPMDKEKITEEIDMSHMMVRTEILCSKCDAHLGHVF--DDGPQPTGQRYCVNSASLRFHSADGDA 134          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ECO81 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O81 (strain ED1a) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            VY+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++   G+
Sbjct:   43 VYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PHPTGERYCVNSASLRFTDGE 130          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_AZOVD (Peptide methionine sulfoxide reductase msrB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  119 ERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            ER R  R  G ++   G         VY+CA C   L+ S  K+D+GCGWP++++ +  +   S D       R E+ CA C  HLGHVF       PT  R+C+NS S++  P D
Sbjct:   18 ERFRICRLGGTERAFSGEYYATSVPGVYHCACCDAPLFDSDAKYDAGCGWPSYFQPVAASALTSRDDYSHGMHRIEVLCARCDAHLGHVFPDG--PPPTGLRYCINSASLRLKPRD 131          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALAR (Peptide methionine sulfoxide reductase msrB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 39/84 (46.43%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C   L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCEAPLFHSHTKYDSGCGWPSFYQPVSKEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALA4 (Peptide methionine sulfoxide reductase msrB OS=Salmonella agona (strain SL483) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 39/84 (46.43%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C   L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDMPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_XYLFA (Peptide methionine sulfoxide reductase msrB OS=Xylella fastidiosa GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.139e-13
Identity = 40/87 (45.98%), Postives = 47/87 (54.02%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIP 427
            Y C  CG  L+ S  KF SG GWP+F+E    A  R          RTEI CA C  HLGH+F       PT ER+C+NSVS+  IP
Sbjct:   52 YTCRFCGLPLFHSNAKFKSGTGWPSFFEPYTHAHIRKQHDTSHGMIRTEILCARCNSHLGHLFPDG--PPPTYERYCLNSVSLTFIP 136          

HSP 2 Score: 21.557 bits (44), Expect = 4.139e-13
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3
Query:   81 AILSPEQFRILRQKGTE 131
            A L+ E+ RIL Q GTE
Sbjct:   20 ATLNAEEHRILLQHGTE 36          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PECCP (Peptide methionine sulfoxide reductase msrB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY+C  C   L+ S +K+DSGCGWP+F + +     R  + D    RR EI C  C  HLGHVF  +G KT T ER+CVNS S+  I
Sbjct:   45 VYHCLCCQAPLFYSDSKYDSGCGWPSFDQPVSSEAVRYLEDDSHNMRRIEIRCGQCDAHLGHVFP-DGPKT-TGERYCVNSASLSFI 129          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ESCF3 (Peptide methionine sulfoxide reductase msrB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY C  C T L+ S +K+DSGCGWP+FYE +   +I    D      R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYRCLVCDTPLFNSQSKYDSGCGWPSFYEPVNENSIRYLTDLSHGMERIEIRCGHCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_CELJU (Peptide methionine sulfoxide reductase msrB OS=Cellvibrio japonicus (strain Ueda107) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 45/112 (40.18%), Postives = 57/112 (50.89%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--WV------YNCAGCGTALYKSVTKFDSGCGWPAFY-EGLPGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            TPE+ R  R  G ++   G  W       Y+C  CG  L+ + TKFD+GCGWP+FY      A+    D      RTE+ C  C  HLGHVF       PT  R+C+NS SI
Sbjct:   17 TPEQYRICREKGTERPFTGEYWQEFRPGRYHCRCCGELLFDADTKFDAGCGWPSFYTPATKTAVREQLDTSHGMYRTEVLCRRCDCHLGHVFTDG--PEPTGLRYCINSASI 126          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB2_DANRE2.429e-1337.89Methionine-R-sulfoxide reductase B2, mitochondrial... [more]
MSRB_HAHCH2.678e-1338.02Peptide methionine sulfoxide reductase msrB OS=Hah... [more]
MSRB_ECO812.678e-1344.44Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_AZOVD2.678e-1336.21Peptide methionine sulfoxide reductase msrB OS=Azo... [more]
MSRB_SALAR3.498e-1346.43Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALA43.498e-1346.43Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_XYLFA4.139e-1345.98Peptide methionine sulfoxide reductase msrB OS=Xyl... [more]
MSRB_PECCP4.568e-1347.13Peptide methionine sulfoxide reductase msrB OS=Pec... [more]
MSRB_ESCF34.568e-1347.62Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_CELJU4.568e-1340.18Peptide methionine sulfoxide reductase msrB OS=Cel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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