EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SERP5 (Peptide methionine sulfoxide reductase msrB OS=Serratia proteamaculans (strain 568) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.967e-13
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            VY+C  C   L+ S +K+DSGCGWP+FY+ +     R  D +     R EI C  C  HLGHVF       PT ER CVNS S+    G+
Sbjct:   43 VYHCLCCNQPLFYSDSKYDSGCGWPSFYQPVSDDAIRYLDDNTHNMHRVEIRCGHCDAHLGHVFPDG--PQPTGERFCVNSASLSFTDGE 130          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ERWT9 (Peptide methionine sulfoxide reductase msrB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=msrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.967e-13
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  C   L+ S +K+DSGCGWP+FY+   P AI    D     +R EI C +C  HLGHVF       PT ER CVNS S+
Sbjct:   43 IYHCLICRAPLFLSDSKYDSGCGWPSFYQPFSPEAIRYLEDDSHGMQRVEIRCGSCDAHLGHVFPDG--PQPTGERFCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPY (Peptide methionine sulfoxide reductase msrB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPS (Peptide methionine sulfoxide reductase msrB OS=Yersinia pseudotuberculosis GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPP (Peptide methionine sulfoxide reductase msrB OS=Yersinia pestis (strain Pestoides F) GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPN (Peptide methionine sulfoxide reductase msrB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPG (Peptide methionine sulfoxide reductase msrB OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPE (Peptide methionine sulfoxide reductase msrB OS=Yersinia pestis GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPB (Peptide methionine sulfoxide reductase msrB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERPA (Peptide methionine sulfoxide reductase msrB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_SERP55.967e-1343.33Peptide methionine sulfoxide reductase msrB OS=Ser... [more]
MSRB_ERWT95.967e-1346.43Peptide methionine sulfoxide reductase msrB OS=Erw... [more]
MSRB_YERPY1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPS1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPP1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPN1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPG1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPE1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPB1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_YERPA1.018e-1243.68Peptide methionine sulfoxide reductase msrB OS=Yer... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
back to top