EY739378 | Citrus Genome Database

Overview


Name	EY739378
Unique Name	EY739378
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	886

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_THEEB (Peptide methionine sulfoxide reductase msrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 2

Query:  113 TPERNRAARNWGVQQVV--CGW------VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGDAPAS 445
            TPE+    R  G ++    C W      +Y+C  CGT L++S TK+DSG GWP+F++ L P  I    D      RTE+ CA C  HLGHVF  E    PT  R+C+NS ++  +P  A +S
Sbjct:   16 TPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTGWPSFWQPLDPNNIRMERDLSHGMVRTEVLCAVCDAHLGHVF--EDGPPPTGLRYCINSAALAFVPESAASS 135

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: YL56_CAEEL (Uncharacterized protein F44E2.6 OS=Caenorhabditis elegans GN=F44E2.6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.698e-16
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 2

Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAFYE--GLPGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSV 409
            Y C  CG+ L+ S  KF +GCGWPAF E  G    I R  D      RTE+ C  C  HLGHVF  +G K  T ER+C+NSV
Sbjct:   64 YVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVF-NDGPKETTGERYCINSV 144

HSP 2 Score: 33.8834 bits (76), Expect = 2.698e-16
Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 3

Query:   66 EEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADG 173
            + EW+++L  E +R+ R+ GTE   TG +N  +  G
Sbjct:   27 QTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKG 62

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_HERAR (Peptide methionine sulfoxide reductase msrB OS=Herminiimonas arsenicoxydans GN=msrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.723e-16
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDP--DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +Y C  C T L+ S  KFDSGCGWP+++  L P  +    D      RTE+ C  C  HLGHVF       PT  R+C+NS S++
Sbjct:   45 IYTCVCCNTPLFASDAKFDSGCGWPSYFTALNPDNVKEKIDRAYGMIRTEVICNVCDAHLGHVFNDG--PPPTGLRYCINSASLR 127

HSP 2 Score: 33.8834 bits (76), Expect = 2.723e-16
Identity = 16/45 (35.56%), Postives = 24/45 (53.33%), Query Frame = 3

Query:   48 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFTT 182
            + V KT+ EWRA+L  E++ + R   TE   +G Y   +  G  T
Sbjct:    3 EKVIKTDAEWRAMLDDEEYDVTRHAATEAPFSGRYWDHHEHGIYT 47

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VIBCM (Peptide methionine sulfoxide reductase msrB OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.518e-16
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  C +AL+ S  K+DSGCGWP+F   +   + R  D       RTEI CAAC  HLGHVF+ +G KT T  R CVNSVS+
Sbjct:   61 LYHCTCCQSALFSSENKYDSGCGWPSFDAPINEQVIRFLDDFSHGMVRTEIRCAACDSHLGHVFE-DGPKT-TGLRFCVNSVSL 142

HSP 2 Score: 29.6462 bits (65), Expect = 3.518e-16
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 3

Query:   54 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGE 149
            + K +E WR  L+ E F + RQ+GTE   +G+
Sbjct:   21 LHKPDEYWREHLTEEAFYVCRQQGTEAPYSGK 52

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VIBCH (Peptide methionine sulfoxide reductase msrB OS=Vibrio cholerae GN=msrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.518e-16
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  C +AL+ S  K+DSGCGWP+F   +   + R  D       RTEI CAAC  HLGHVF+ +G KT T  R CVNSVS+
Sbjct:   61 LYHCTCCQSALFSSENKYDSGCGWPSFDAPINEQVIRFLDDFSHGMVRTEIRCAACDSHLGHVFE-DGPKT-TGLRFCVNSVSL 142

HSP 2 Score: 29.6462 bits (65), Expect = 3.518e-16
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 3

Query:   54 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGE 149
            + K +E WR  L+ E F + RQ+GTE   +G+
Sbjct:   21 LHKPDEYWREHLTEEAFYVCRQQGTEAPYSGK 52

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VIBC3 (Peptide methionine sulfoxide reductase msrB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.518e-16
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  C +AL+ S  K+DSGCGWP+F   +   + R  D       RTEI CAAC  HLGHVF+ +G KT T  R CVNSVS+
Sbjct:   61 LYHCTCCQSALFSSENKYDSGCGWPSFDAPINEQVIRFLDDFSHGMVRTEIRCAACDSHLGHVFE-DGPKT-TGLRFCVNSVSL 142

HSP 2 Score: 29.6462 bits (65), Expect = 3.518e-16
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 3

Query:   54 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGE 149
            + K +E WR  L+ E F + RQ+GTE   +G+
Sbjct:   21 LHKPDEYWREHLTEEAFYVCRQQGTEAPYSGK 52

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURPS (Peptide methionine sulfoxide reductase msrB OS=Burkholderia pseudomallei GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.525e-16
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-16
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3

Query:   60 KTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            K + E R  L+P Q+ + +   TEP  TGEY
Sbjct:   14 KDDAELRRRLTPMQYEVTQHAATEPPFTGEY 44

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURMS (Peptide methionine sulfoxide reductase msrB OS=Burkholderia mallei (strain SAVP1) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.525e-16
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-16
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3

Query:   60 KTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            K + E R  L+P Q+ + +   TEP  TGEY
Sbjct:   14 KDDAELRRRLTPMQYEVTQHAATEPPFTGEY 44

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURMA (Peptide methionine sulfoxide reductase msrB OS=Burkholderia mallei GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.525e-16
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-16
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3

Query:   60 KTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            K + E R  L+P Q+ + +   TEP  TGEY
Sbjct:   14 KDDAELRRRLTPMQYEVTQHAATEPPFTGEY 44

[Close]

BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURM9 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia mallei (strain NCTC 10229) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.525e-16
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 2

Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-16
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3

Query:   60 KTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            K + E R  L+P Q+ + +   TEP  TGEY
Sbjct:   14 KDDAELRRRLTPMQYEVTQHAATEPPFTGEY 44

The following BLAST results are available for this feature:

BLAST of EY739378 vs. ExPASy Swiss-Prot

BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139


Match Name	E-value	Identity	Description
MSRB_THEEB	1.517e-16	40.16	Peptide methionine sulfoxide reductase msrB OS=The...	[more]
YL56_CAEEL	2.698e-16	48.78	Uncharacterized protein F44E2.6 OS=Caenorhabditis ...	[more]
MSRB_HERAR	2.723e-16	42.35	Peptide methionine sulfoxide reductase msrB OS=Her...	[more]
MSRB_VIBCM	3.518e-16	50.00	Peptide methionine sulfoxide reductase msrB OS=Vib...	[more]
MSRB_VIBCH	3.518e-16	50.00	Peptide methionine sulfoxide reductase msrB OS=Vib...	[more]
MSRB_VIBC3	3.518e-16	50.00	Peptide methionine sulfoxide reductase msrB OS=Vib...	[more]
MSRB_BURPS	3.525e-16	42.86	Peptide methionine sulfoxide reductase msrB OS=Bur...	[more]
MSRB_BURMS	3.525e-16	42.86	Peptide methionine sulfoxide reductase msrB OS=Bur...	[more]
MSRB_BURMA	3.525e-16	42.86	Peptide methionine sulfoxide reductase msrB OS=Bur...	[more]
MSRB_BURM9	3.525e-16	42.86	Peptide methionine sulfoxide reductase msrB OS=Bur...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT