EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_METMA (Peptide methionine sulfoxide reductase msrB OS=Methanosarcina mazei GN=msrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            TPE+    R  G ++   G         +Y CA CG  L+ S TKF+SG GWP+FY+ +     R  + +    +R E+ C+ CG HLGHVF  E    PT +R+C+NSVS+
Sbjct:   18 TPEQYHVLRQKGTERPFSGNLYYNKEKGIYTCAACGQELFSSDTKFESGTGWPSFYDVISSDRVRLHEDNSYFMKRIEVVCSRCGSHLGHVF--EDGPEPTGQRYCINSVSL 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_AGRT5 (Peptide methionine sulfoxide reductase msrB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=msrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--W------VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            TPE+    R  G ++   G  W      +Y CA C   L+ S TKFD+GCGWP+++E + PGA+    D      RTEI CA CGGHLGHVF       PT  R+C+N  S+
Sbjct:   21 TPEQYHILREHGTERPFTGPYWNSTEKGLYRCAACDEPLFLSDTKFDAGCGWPSYFEPVKPGAVTEHRDSTHGMVRTEIRCANCGGHLGHVFPDG--PPPTGLRYCINGHSM 130          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VIBVU (Peptide methionine sulfoxide reductase msrB OS=Vibrio vulnificus GN=msrB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.705e-16
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSP-------DPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            Y C  C   L+ SV K+DSGCGWP+F       IN +            +R EI CA C  HLGHVF  +G KT T ER CVNSVS+
Sbjct:   65 YACTCCHAPLFSSVNKYDSGCGWPSF----DAPINETAVLYLDDFSHGMKRVEIRCARCDSHLGHVFP-DGPKT-TGERFCVNSVSL 145          

HSP 2 Score: 34.6538 bits (78), Expect = 7.705e-16
Identity = 13/39 (33.33%), Postives = 27/39 (69.23%), Query Frame = 3
Query:   33 MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGE 149
            +T  +  V K++++WR  LS +++ + R++GTEP  +G+
Sbjct:   17 VTKESKVVLKSDQQWREQLSEQEYHVCREQGTEPPFSGK 55          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURP1 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia pseudomallei (strain 1710b) GN=msrB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.744e-16
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  CGTAL++S  K+ SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 29.261 bits (64), Expect = 7.744e-16
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3
Query:   60 KTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            K + E R  L+P Q+ + +   TEP  TGEY
Sbjct:   14 KDDAELRRRLTPMQYEVTQHAATEPPFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_METBF (Peptide methionine sulfoxide reductase msrB OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=msrB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            TPE+    R  G ++   G         VY CA CG  L+ S TKF+SG GWP+FY+ +     R  +       R E+ C+ CG HLGHVF  E    PT +R+C+NSVS+
Sbjct:   18 TPEQYHVLRQKGTERPFSGNLYYNKEKGVYTCAACGQELFSSDTKFESGTGWPSFYDVISSDRVRLKEDTSYFMNRIEVVCSRCGSHLGHVF--EDGPAPTGKRYCINSVSL 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_VIBVY (Peptide methionine sulfoxide reductase msrB OS=Vibrio vulnificus (strain YJ016) GN=msrB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.002e-15
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  176 YNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSP-------DPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            Y C  C   L+ SV K+DSGCGWP+F       IN +            +R EI CA C  HLGHVF  +G KT T ER CVNSVS+
Sbjct:   65 YACTCCYAPLFSSVNKYDSGCGWPSF----DAPINETAVLYLDDFSHGMKRVEIRCARCDSHLGHVFP-DGPKT-TGERFCVNSVSL 145          

HSP 2 Score: 34.6538 bits (78), Expect = 1.002e-15
Identity = 13/39 (33.33%), Postives = 27/39 (69.23%), Query Frame = 3
Query:   33 MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGE 149
            +T  +  V K++++WR  LS +++ + R++GTEP  +G+
Sbjct:   17 VTKESKVVLKSDQQWREQLSEQEYHVCREQGTEPPFSGK 55          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ALTMD (Peptide methionine sulfoxide reductase msrB OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.704e-15
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C   L+ S TKFD+GCGWP+FY+ L  G ++   D     RR EI C  CG HLGHVF       PT +R+CVNS+S+
Sbjct:   49 LYVCKCCEAPLFPSDTKFDAGCGWPSFYKQLDDGNVDYREDVSHGMRRVEIFCKQCGSHLGHVFPDG--PAPTGQRYCVNSLSM 130          

HSP 2 Score: 26.9498 bits (58), Expect = 1.704e-15
Identity = 10/27 (37.04%), Postives = 18/27 (66.67%), Query Frame = 3
Query:   66 EEEWRAILSPEQFRILRQKGTEPRGTG 146
            E++W+  LS +++ + R+ GTE   TG
Sbjct:   13 EKDWKVELSEQEYYVCREAGTERPFTG 39          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_CHRSD (Peptide methionine sulfoxide reductase msrB OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msrB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 47/118 (39.83%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGA-INRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            TPE+ R  R  G ++   G         +Y+C  CG  L+++  KFD+GCGWP+F   L  A I    D     RR E+TC  C  HLGHVF  +G +  T  R+C+NSVS+   PG+
Sbjct:   17 TPEQYRVTREKGTERPFTGDYQVSDEQGIYHCVCCGAPLFENEHKFDAGCGWPSFDRPLADASIEEHLDTSHGMRRIEVTCRRCDSHLGHVFP-DGPQDTTGLRYCINSVSLDFHPGE 133          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PSEP1 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 46/117 (39.32%), Postives = 61/117 (52.14%), Query Frame = 2
Query:  116 PERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            PE+ +  R  G ++   G         +Y+C  CG AL+ + TKFD+GCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:   17 PEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCGLALFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PPPTGLRYCINSVCIDLRPRD 131          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIAD (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter sp. (strain ADP1) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 45/113 (39.82%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CGT L+ S++K+DSGCGWP+FY+ +        D       RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQSGTYVCRCCGTELFSSISKYDSGCGWPSFYKPINTTAIEEHDDFSHGMVRTEIVCHHCDAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_METMA5.766e-1639.29Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_AGRT55.766e-1642.86Peptide methionine sulfoxide reductase msrB OS=Agr... [more]
MSRB_VIBVU7.705e-1647.13Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_BURP17.744e-1641.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_METBF9.835e-1640.18Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_VIBVY1.002e-1547.13Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_ALTMD1.704e-1547.62Peptide methionine sulfoxide reductase msrB OS=Alt... [more]
MSRB_CHRSD2.191e-1539.83Peptide methionine sulfoxide reductase msrB OS=Chr... [more]
MSRB_PSEP13.737e-1539.32Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_ACIAD3.737e-1539.82Peptide methionine sulfoxide reductase msrB OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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