EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACAM1 (Peptide methionine sulfoxide reductase msrB OS=Acaryochloris marina (strain MBIC 11017) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 48/118 (40.68%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR-----RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIP 427
            TPE+ R  R+ G ++   G          Y C  CGT L+ S TKFDSG GWP+F+   P       +   R     RTE+ CA C  HLGHVF  +G K PT  R+C+NS ++K +P
Sbjct:   16 TPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTGWPSFW--APADKTHVEEKTDRSLFMVRTEVLCAVCDAHLGHVF-NDGPK-PTGLRYCMNSAALKFVP 129          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_THIDA (Peptide methionine sulfoxide reductase msrB OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 48/118 (40.68%), Postives = 59/118 (50.00%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--W------VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            +PE+ R  R  G ++   G  W       Y CA CG  L+ S  KFDSG GWP+FYE L   A+    D      RTE  C+ C  HLGHVF       PT  R+C+NS S+   P D
Sbjct:   17 SPEQYRILREQGTERAFTGEYWDHHANGEYRCAACGAPLFSSSAKFDSGTGWPSFYEALNAQAVRERTDTTHGMVRTEALCSRCNSHLGHVFPDG--PPPTGLRYCINSASLSFHPKD 132          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_TERTT (Peptide methionine sulfoxide reductase msrB OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 50/113 (44.25%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            T E  R  R  G +    G          Y C  C T L+KS+ KFD+GCGWP+F+E L  G I    D      RTEI C ACG HLGHVF       PT  R+CVNS SI+
Sbjct:   17 TDEEFRICREKGTEMPFSGKYVDTTEAGTYLCRCCNTPLFKSLAKFDAGCGWPSFFEPLEKGVITEEMDTSLGMVRTEIMCEACGCHLGHVFTDG--PQPTGLRYCVNSASIQ 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURS3 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia sp. (strain 383) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.310e-15
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S +KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGSKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNHCGAHLGHVFE-DGPRDQTGLRYCINSAAL 134          

HSP 2 Score: 29.261 bits (64), Expect = 6.310e-15
Identity = 14/39 (35.90%), Postives = 20/39 (51.28%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADG 173
            +K + E R  L+P Q+ + +   TE   TGEY     DG
Sbjct:   13 EKDDAELRRRLTPMQYEVTQHAATERAFTGEYTDTEDDG 51          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_METTH (Peptide methionine sulfoxide reductase msrB OS=Methanobacterium thermoautotrophicum GN=msrB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  116 PERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG---AINRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            PE  R AR  G +    G         +Y C  CGT L+ S TKFDSG GWP+FY+ +      +         R E+ CA C  HLGHVF  +    PT +R+C+NS ++K IP D
Sbjct:   34 PEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMNSAALKFIPRD 148          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_THISH (Peptide methionine sulfoxide reductase msrB OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=msrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.071e-14
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG---AINRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  C   L+ S  KFDSG GWP++++ + G   ++ R       R E+ CA C  HLGHVF       PT  R+C+NS+S+
Sbjct:   49 IYHCICCDAPLFSSEHKFDSGSGWPSYWQPVSGDALSVVRDTSHGMIREEVRCARCDAHLGHVFPDG--PPPTGLRYCINSLSL 130          

HSP 2 Score: 32.7278 bits (73), Expect = 1.071e-14
Identity = 15/32 (46.88%), Postives = 20/32 (62.50%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            Q T+E  R  LSPE + + R+ GTEP  +G Y
Sbjct:   10 QITDESLRERLSPEAYAVTRRAGTEPPFSGRY 41          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPK (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain KT2440) GN=msrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  116 PERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            PE+ +  R  G ++   G         +Y+C  CG  L+ + TKFD+GCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:   17 PEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCGLPLFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PPPTGLRYCINSVCIDLRPRD 131          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURVG (Peptide methionine sulfoxide reductase msrB OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.800e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDRSHGMVRVEVRCNHCGAHLGHVFE-DGPRDQTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 1.800e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURCM (Peptide methionine sulfoxide reductase msrB OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.800e-14
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI--NRSPDPDGR-RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G +   +     G  R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDRTHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 1.800e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURCH (Peptide methionine sulfoxide reductase msrB OS=Burkholderia cenocepacia (strain HI2424) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.800e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNNCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 1.800e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_ACAM13.737e-1540.68Peptide methionine sulfoxide reductase msrB OS=Aca... [more]
MSRB_THIDA4.881e-1540.68Peptide methionine sulfoxide reductase msrB OS=Thi... [more]
MSRB_TERTT4.881e-1544.25Peptide methionine sulfoxide reductase msrB OS=Ter... [more]
MSRB_BURS36.310e-1541.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_METTH8.326e-1539.32Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_THISH1.071e-1439.29Peptide methionine sulfoxide reductase msrB OS=Thi... [more]
MSRB_PSEPK1.420e-1438.46Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_BURVG1.800e-1441.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCM1.800e-1440.48Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCH1.800e-1441.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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