EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURCC (Peptide methionine sulfoxide reductase msrB OS=Burkholderia cenocepacia (strain MC0-3) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.800e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 1.800e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURCA (Peptide methionine sulfoxide reductase msrB OS=Burkholderia cenocepacia (strain AU 1054) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.800e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNNCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 1.800e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURA4 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia ambifaria (strain MC40-6) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.800e-14
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI--NRSPDPDGR-RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G +   +     G  R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDHMHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 1.800e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURCJ (Peptide methionine sulfoxide reductase msrB OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=msrB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.339e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDYSHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 2.339e-14
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            QK + E R  L+P Q+ + +   TE   TGEY
Sbjct:   13 QKDDAELRRRLTPMQYEVTQHAATERAFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPG (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain GB-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.422e-14
Identity = 45/117 (38.46%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  116 PERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            PE+ +  R  G ++   G         +Y+C  C   L+ + TKFDSGCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:   17 PEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCNLPLFDAQTKFDSGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PAPTGLRYCINSVCIDLRPRD 131          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB1_RHIME (Peptide methionine sulfoxide reductase msrB 1 OS=Rhizobium meliloti GN=msrB1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.422e-14
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            TPE+ R  R  G ++   G          Y C  CG AL++S TKFDSGCGWP+++  + P AI    D      RTEI CA C  HLGHVF       PT  R+C+N  ++
Sbjct:   21 TPEQYRVTREHGTERPFTGPFLDNKRHGTYKCVCCGRALFRSDTKFDSGCGWPSYFAPVDPDAIAEYVDRSHLMVRTEIRCADCDAHLGHVFPDG--PPPTGLRYCLNGTAM 130          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURM1 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=msrB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.040e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYKCVVCDTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDYSHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 28.1054 bits (61), Expect = 3.040e-14
Identity = 14/39 (35.90%), Postives = 20/39 (51.28%), Query Frame = 3
Query:   57 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADG 173
            +K + E R  L+P Q+ + +   TE   TGEY     DG
Sbjct:   13 RKDDAELRRRLTPLQYEVTQHAATERAFTGEYTDKEDDG 51          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_BURTA (Peptide methionine sulfoxide reductase msrB OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msrB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.950e-14
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y+C  CGTAL++S  K+ SGCGWP++++ +    I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++
Sbjct:   52 IYHCVVCGTALFESGAKYHSGCGWPSYFKPIDAEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAAL 134          

HSP 2 Score: 25.7942 bits (55), Expect = 3.950e-14
Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 3
Query:   60 KTEEEWRAILSPEQFRILRQKGTEPRGTGEY 152
            K + E R  L+P Q+ + +   TE   TGEY
Sbjct:   14 KDDAELRRRLTPMQYEVTQHAATERPFTGEY 44          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALTY (Peptide methionine sulfoxide reductase msrB OS=Salmonella typhimurium GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALTI (Peptide methionine sulfoxide reductase msrB OS=Salmonella typhi GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_BURCC1.800e-1441.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCA1.800e-1441.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURA41.800e-1440.48Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCJ2.339e-1441.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_PSEPG2.422e-1438.46Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB1_RHIME2.422e-1441.07Peptide methionine sulfoxide reductase msrB 1 OS=R... [more]
MSRB_BURM13.040e-1441.67Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURTA3.950e-1440.48Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_SALTY7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALTI7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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