EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALSV (Peptide methionine sulfoxide reductase msrB OS=Salmonella schwarzengrund (strain CVM19633) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALPB (Peptide methionine sulfoxide reductase msrB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALNS (Peptide methionine sulfoxide reductase msrB OS=Salmonella newport (strain SL254) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALHS (Peptide methionine sulfoxide reductase msrB OS=Salmonella heidelberg (strain SL476) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SALDC (Peptide methionine sulfoxide reductase msrB OS=Salmonella dublin (strain CT_02021853) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C T L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPW (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain W619) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 45/117 (38.46%), Postives = 58/117 (49.57%), Query Frame = 2
Query:  116 PERNRAARNWGVQQVVCG--------WVYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            PE+ +  R  G ++   G          Y+C  C   L+ S TKFDSGCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV +   P D
Sbjct:   17 PEQYQVCRLKGTERPFTGKYNSEKRAGTYHCICCDLPLFDSNTKFDSGCGWPSFYAPIEDSAMIETRDTSHGMIRTEVTCAQCDAHLGHVFPDG--PPPTGLRYCINSVCLDFKPRD 131          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_DECAR (Peptide methionine sulfoxide reductase msrB OS=Dechloromonas aromatica (strain RCB) GN=msrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  128 RAARNWGVQQVVCG--W------VYNCAGCGTALYKSVTKFDSGCGWPAFY-EGLPGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            R  R  G ++   G  W       Y C  CG  L++S TKFDSGCGWP+F+       I+   D      RTE+TC  CG HLGHVF  +    PT  R+C+NS S+K
Sbjct:   21 RVTRQKGTERAFTGKYWDTHDDGTYRCICCGAPLFRSETKFDSGCGWPSFHTPNDEKLIDEHVDQSFGMIRTEVTCHDCGAHLGHVF--DDGPAPTGLRYCINSASLK 126          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ECO45 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            VY+C  C   L+ S TK+DSGCGWP+FYE L     R         +R EI C  C  HLGHVF       PT ER+CVNS S++   G+
Sbjct:   43 VYHCLICDAPLFHSQTKYDSGCGWPSFYEPLSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBY (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain AYE) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBT (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_SALSV7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALPB7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALNS7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALHS7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALDC7.048e-1447.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_PSEPW7.048e-1438.46Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_DECAR7.048e-1441.67Peptide methionine sulfoxide reductase msrB OS=Dec... [more]
MSRB_ECO459.205e-1445.56Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ACIBY9.205e-1438.94Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIBT9.205e-1438.94Peptide methionine sulfoxide reductase msrB OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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