EY739378

Overview
NameEY739378
Unique NameEY739378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBS (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain SDF) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBC (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain ACICU) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIB5 (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain AB0057) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_ACIB3 (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain AB307-0294) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  113 TPERNRAARNWGVQQVVCGWVYN--------CAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 418
            +PE  R  R  G +    G  +N        C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:   16 SPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_KLEP7 (Peptide methionine sulfoxide reductase msrB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.202e-13
Identity = 39/84 (46.43%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C   L+ S TK+DSGCGWP+FYE +     R    +    +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDAPLFNSQTKYDSGCGWPSFYEPVSAEAIRYLTDNSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_PASMU (Peptide methionine sulfoxide reductase msrB OS=Pasteurella multocida GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            +Y C  C + L+ S TKFD+GCGWP+F++ + P AI    D      RTEI C  C  HLGHVF  E    PT  R+CVNSVS+
Sbjct:   36 LYRCVVCHSPLFVSDTKFDAGCGWPSFFQAISPEAIRYLDDYTLSRPRTEIRCGQCDAHLGHVF--EDGPPPTGLRYCVNSVSM 117          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_KLEP3 (Peptide methionine sulfoxide reductase msrB OS=Klebsiella pneumoniae (strain 342) GN=msrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 39/84 (46.43%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 415
            VY+C  C   L+ S TK+DSGCGWP+FYE +     R    +    +R EI C  C  HLGHVF       PT ER+CVNS S+
Sbjct:   43 VYHCLVCDAPLFNSQTKYDSGCGWPSFYEPVSDEAIRYLTDNSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASL 124          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_YERE8 (Peptide methionine sulfoxide reductase msrB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 40/87 (45.98%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCI 424
            VY C  C   L+ S +KFDSGCGWP+FY+ L     R  D    +  R EI C  C  HLGHVF       PT ER+CVNS S+  +
Sbjct:   43 VYQCLCCHQPLFISESKFDSGCGWPSFYQPLDAESIRYIDDYSHNMHRVEIRCGHCDAHLGHVFSDG--PQPTGERYCVNSASLNFV 127          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SHISS (Peptide methionine sulfoxide reductase msrB OS=Shigella sonnei (strain Ss046) GN=msrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            VY+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++   G+
Sbjct:   43 VYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of EY739378 vs. ExPASy Swiss-Prot
Match: MSRB_SHIFL (Peptide methionine sulfoxide reductase msrB OS=Shigella flexneri GN=msrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  173 VYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKCIPGD 433
            VY+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++   G+
Sbjct:   43 VYHCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
The following BLAST results are available for this feature:
BLAST of EY739378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MSRB_ACIBS9.205e-1438.94Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIBC9.205e-1438.94Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIB59.205e-1438.94Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIB39.205e-1438.94Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_KLEP71.202e-1346.43Peptide methionine sulfoxide reductase msrB OS=Kle... [more]
MSRB_PASMU1.570e-1348.81Peptide methionine sulfoxide reductase msrB OS=Pas... [more]
MSRB_KLEP31.570e-1346.43Peptide methionine sulfoxide reductase msrB OS=Kle... [more]
MSRB_YERE82.051e-1345.98Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_SHISS2.051e-1344.44Peptide methionine sulfoxide reductase msrB OS=Shi... [more]
MSRB_SHIFL2.051e-1344.44Peptide methionine sulfoxide reductase msrB OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739378 ID=EY739378; Name=EY739378; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGAAAAGATTGAAACCAAACCCCATGACTGCAGCAGCAGAT
TCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCA
GTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGT
ACAACAAGTTGTATGCGGATGGGTTTACAACTGTGCTGGCTGTGGAACTG
CGCTTTACAAGTCTGTTACCAAATTCGATTCTGGATGTGGGTGGCCAGCT
TTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCCCCTGATCCTGATGG
AAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGGTCACTTGGGTCACG
TCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATGAACGCCACTGTGTC
AATAGTGTGTCAATTAAGTGTATTCCAGGTGATGCTCCTGCTTCATCATG
AAGAATGTAAGACTGTCATGGGGGTTGTTGAATAAGATTTGACTGTTTGT
CACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGACATGGTGTTGTGT
GTATAATGATTACGCGGGCGATATTAGCCTATGCCATAGTATAAACCACT
TTGTGTGGTTTGGACGGGGGGGCGGGGCGGGGGGGAGGGGGGGGGGGAAG
GGGCGGCCGGTCAAGAGGAATCAGGCTTACGTGGGGGTGGTGGGGAGGGG
GAGCTGGTCTCATGTGTTACCTGAGTGCGATTCGGTGGGCGGTCGTGTGG
AGAGGTTGGGGCCGGGGAAAGCGGGGGGGTTGCCCGGGCGGGGGCGGGGG
GGGGGGGAGGTCGCTTTTGGGGAGGGGGGGGTTATGGGGGAGTGGGGGGG
TTGAGGTGGGCGTCGGGGGGGGGGTGGGGGGGGGGT
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