EY739373

Overview
NameEY739373
Unique NameEY739373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2877 contig Csv1_Contig2877:70..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY739373 vs. ExPASy Swiss-Prot
Match: TPC1_MAGGR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Magnaporthe grisea GN=TPC1 PE=3 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 2.382e-11
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  184 PLDTAKVRLQLQ----KKPVAGDGVAL---PKYKGMLGTVATIAREEGMVSLWKGIVP 336
            PLD  K+RLQLQ      P++     L   P YKG L T+  IAR+EG+  LWKG VP
Sbjct:   35 PLDVVKIRLQLQTHSLSDPLSQRAELLRGGPVYKGTLSTMRHIARQEGITGLWKGNVP 92          

HSP 2 Score: 41.2022 bits (95), Expect = 2.382e-11
Identity = 22/87 (25.29%), Postives = 39/87 (44.83%), Query Frame = 2
Query:  437 SKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVK 697
            ++  +AG   G     +  P DL++ R  A+G    G  R Y     A + I + EG+   + G+GP V +         A+Y+ ++
Sbjct:  129 AESFVAGAAAGVTSTTVTYPLDLLRTRFAAQGS---GDDRVYQSLRRAVADIWRDEGYRGFFRGIGPAVGQTFPFMGIFFAAYESLR 212          
BLAST of EY739373 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 3.106e-11
Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 2
Query:  422 GDVPLSKKIL-AGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTIWK 712
            G  P S  +L AG   G    + A P D++K R+Q +G       R+Y G L+  ++  +QEG    + G+  N AR   +NAA   SY+ + + +W+
Sbjct:  196 GQNPSSATVLVAGGFAGIASWITATPFDVIKSRMQMDGLKG----RKYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNAATFLSYEYLLR-LWR 288          

HSP 2 Score: 43.1282 bits (100), Expect = 3.106e-11
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 1
Query:  175 CTIPLDTAKVRLQLQKKPVAGDGVALPKYKGMLGTVATIAREEGMVSLWKG 327
            C  P D  KVRLQ Q +P      ++P+Y+G +   A+I REEG   L++G
Sbjct:  116 CLAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRG 166          
BLAST of EY739373 vs. ExPASy Swiss-Prot
Match: S2545_HUMAN (Solute carrier family 25 member 45 OS=Homo sapiens GN=SLC25A45 PE=2 SV=2)

HSP 1 Score: 44.2838 bits (103), Expect = 5.234e-11
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 1
Query:  175 CTIPLDTAKVRLQLQKKPVAGDGVALPKYKGMLGTVATIAREEGMVSLWKG 327
            C  P D  KVRLQ Q +P A  G   P+Y+G +   A+I REEG   L++G
Sbjct:  116 CLAPFDLIKVRLQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRG 166          

HSP 2 Score: 44.2838 bits (103), Expect = 5.234e-11
Identity = 30/90 (33.33%), Postives = 43/90 (47.78%), Query Frame = 2
Query:  422 GDVPLSKKIL-AGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYD 688
            G  P S  +L AG   G    + A P D++K R+Q +G       R Y G L+   + ++QEG    + GV  N AR   +NA    SY+
Sbjct:  196 GQNPSSATVLVAGGFAGIASWVAATPLDMIKSRMQMDGLRR----RVYQGMLDCMVSSIRQEGLGVFFRGVTINSARAFPVNAVTFLSYE 281          
BLAST of EY739373 vs. ExPASy Swiss-Prot
Match: TPC1_YARLI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Yarrowia lipolytica GN=TPC1 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.769e-11
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 1
Query:  175 CTIPLDTAKVRLQLQKKPVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTV 402
            C  PLD  K+RLQLQK     DG     Y+G+  T+  I R+EG+ +LWKG +P       +G  +   Y  V  V
Sbjct:   30 CIAPLDVVKIRLQLQK-----DGSRY--YRGIFQTMQQIVRDEGVTALWKGNIPAELLYVFYGATQFVTYHHVNQV 98          

HSP 2 Score: 36.5798 bits (83), Expect = 8.769e-11
Identity = 24/90 (26.67%), Postives = 39/90 (43.33%), Query Frame = 2
Query:  437 SKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTI 706
            ++  +AG T GA   +   P DL +    A+G     V + Y+     +  I K EG    + GV  ++   A       ASY +VK ++
Sbjct:  115 AQSFIAGATAGAGATIATYPFDLFRTLFAAQGAKNCNV-KNYTSLFQTFKLIYKTEGPLGFFRGVSSSIISIAPYMGLFFASYGRVKDSL 203          
BLAST of EY739373 vs. ExPASy Swiss-Prot
Match: HDMCP_HUMAN (Hepatocellular carcinoma down-regulated mitochondrial carrier protein OS=Homo sapiens GN=HDMCP PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 8.795e-11
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 2
Query:  446 ILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQV 694
            ++AG   G L   +A P D++K RLQA+G+      RRY G L+   T V++EG   L+ G+  N  R   +N     +Y+ V
Sbjct:  221 LVAGGCAGVLAWAVATPMDVIKSRLQADGQ----GQRRYRGLLHCMVTSVREEGPRVLFKGLVLNCCRAFPVNMVVFVAYEAV 299          

HSP 2 Score: 38.891 bits (89), Expect = 8.795e-11
Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 1
Query:  178 TIPLDTAKVRLQLQ-------KKPVAGDGVALP------------KYKGMLGTVATIAREEGMVSLWKG 327
            T P + AKVRLQ Q       ++  A   +A+P            KY+G L  +AT+AREEG+  L+KG
Sbjct:  113 TSPTEVAKVRLQTQTQAQKQQRRLSASGPLAVPPMCPVPPACPEPKYRGPLHCLATVAREEGLCGLYKG 181          
BLAST of EY739373 vs. ExPASy Swiss-Prot
Match: DIC1_YEAST (Mitochondrial dicarboxylate transporter OS=Saccharomyces cerevisiae GN=DIC1 PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 8.805e-11
Identity = 25/79 (31.65%), Postives = 43/79 (54.43%), Query Frame = 2
Query:  464 TGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQE-GFAALWTGVGPNVARNAIINAAELASYDQVK 697
            +GA+G +  N  D+V +R+Q +  L     R Y  A++    I + E G   L+TG  PN+ R  ++ A+++ +YD  K
Sbjct:  115 SGAIGGLAGNFADVVNIRMQNDSALEAAKRRNYKNAIDGVYKIYRYEGGLKTLFTGWKPNMVRGILMTASQVVTYDVFK 193          

HSP 2 Score: 39.2762 bits (90), Expect = 8.805e-11
Identity = 27/73 (36.99%), Postives = 36/73 (49.32%), Query Frame = 1
Query:  178 TIPLDTAKVRLQLQKKPVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVK 396
            T PLD AKVRLQ    P        P    ML    +I   EG+V L+ G+   + RQC +  +R G Y+ +K
Sbjct:   31 THPLDLAKVRLQAAPMPK-------PTLFRML---ESILANEGVVGLYSGLSAAVLRQCTYTTVRFGAYDLLK 93          
The following BLAST results are available for this feature:
BLAST of EY739373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
TPC1_MAGGR2.382e-1148.28Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2545_MOUSE3.106e-1131.63Solute carrier family 25 member 45 OS=Mus musculus... [more]
S2545_HUMAN5.234e-1145.10Solute carrier family 25 member 45 OS=Homo sapiens... [more]
TPC1_YARLI8.769e-1138.16Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
HDMCP_HUMAN8.795e-1134.94Hepatocellular carcinoma down-regulated mitochondr... [more]
DIC1_YEAST8.805e-1131.65Mitochondrial dicarboxylate transporter OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-E08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739373 ID=EY739373; Name=EY739373; organism=Citrus sinensis; type=EST; length=831bp
CACGCGTCCGCGGACGCGTGGGTAAAAATCTCAGCTTTCCTCTTTGTTTC
GCTATAAAGATTACGCTCGTTTCTTTGCCTTAAAAACATGGTGGCCGATT
CCAAGGCTAAATCTGACATCTCTTTAGCCGGAACTTTCGCCAGCAGCGCT
TTTGCCGCTTGCTTTGCCGAGATTTGTACTATTCCTTTGGACACTGCTAA
AGTTAGGCTTCAGCTGCAAAAGAAACCTGTCGCGGGGGATGGAGTGGCGT
TGCCAAAGTACAAGGGTATGTTGGGTACAGTTGCCACCATAGCTAGGGAA
GAAGGTATGGTGTCTCTCTGGAAAGGCATTGTTCCAGGATTACATCGTCA
ATGCTTATTTGGAGGGTTAAGGATTGGATTGTATGAGCCTGTGAAGACTG
TATGTGGGCAAGGACTTTGTTGGAGACGTTCCTTTAAGCAAGAAAATACT
TGCAGGACTTACAACTGGTGCTCTCGGGATCATGATCGCAAATCCAACTG
ATCTTGTGAAAGTCAGACTTCAAGCTGAAGGAAAATTGCCTCCTGGTGTA
CCGAGGCGATACAGTGGAGCGTTGAATGCTTATTCCACAATTGTGAAACA
GGAAGGATTTGCGGCTCTTTGGACTGGAGTTGGACCCAATGTTGCACGAA
ATGCTATCATAAATGCTGCTGAACTGGCTAGCTATGATCAAGTGAAGCAG
ACAATTTGGAAAATTCCAGGTTCACAGATAACGTCGTCACTCATCTCCTT
TCTGGTCTGGGAACCTGTTTTGGTCCGTGTTGTATTGGTCCCCCTGTGAT
GTGGGTCAATCCAAGAATAAGGGGGAGCCTG
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