EY736446

Overview
NameEY736446
Unique NameEY736446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_ALCBS (Nucleoside diphosphate kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD ++ N   EI     ++G S++  ++V L ++ A  FYAEH  R FF  L+ +MTSGPV+  VLE E+A+   R L+G T+ K+A
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIVTRFEKAGLSVVAMKMVHLSDEKAGGFYAEHKERPFFKDLVGFMTSGPVVVQVLEGEDAVAKNRDLMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_HAEDU (Nucleoside diphosphate kinase OS=Haemophilus ducreyi GN=ndk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.546e-15
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVL 496
            ++TL +IKPD    N   +I   +  +G  I   + ++L +  A+ FY EH  + FF+SL+ +M S P++A+VLE ENAI  +R L+G T+ ++        LY +
Sbjct:    3 QQTLCLIKPDATQRNLIGKIISYLENAGLKIKAIKKLQLTQAQAEKFYLEHQDKPFFASLVGFMISAPIVAIVLEGENAIAHYRELMGATNPEQREAGTIRALYAI 108          

HSP 2 Score: 29.261 bits (64), Expect = 3.546e-15
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3
Query:  618 TIRAMFGLDSENNCVHGF*LSVSGPRR-DVFFLSRGVC 728
            TIRA++ + ++ N VHG     S  R  D FF    +C
Sbjct:  101 TIRALYAISNQENSVHGSDSETSAKREIDYFFSKEEIC 138          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_WOLPP (Nucleoside diphosphate kinase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL+++KPD +  N T  I   I +SG  I+ +R + L +  A+ FY  H  R FF  L+++MTSG V+  VL  ENA++ +R ++G TD K+A
Sbjct:    4 ERTLSILKPDAVKNNITGSINSYIEKSGLKIIAQRKMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLIGENAVSKYRQIMGATDPKQA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_VIBSL (Nucleoside diphosphate kinase OS=Vibrio splendidus (strain LGP32) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T +++KPD +  N   EI   I ++G  I+  ++V L E  A  FYAEH  + FF  L ++MTSGP++  VLE ENAI  +R L+G T+ ++A
Sbjct:    4 ERTFSIVKPDAVKRNLVGEIYHRIEKAGLQIIAAKMVSLTEAQASGFYAEHEGKEFFGPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SHEDO (Nucleoside diphosphate kinase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD ++ N+   I      +G  I+  ++V L ++ A+ FYAEHS+R FF +L+ +MTSGPV+  VLE ENA+   R ++G T+  +A
Sbjct:    4 ERTFSIIKPDAVAKNHIGAIYNRFESAGLKIIASKMVHLTKEQAEGFYAEHSARPFFGALVSFMTSGPVMVQVLEGENAVLANREIMGATNPAEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_PSEPK (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain KT2440) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T ++IKPD ++ N   +I     E+G  I+  ++ +L +  A+ FYAEHS R FF  L+ +MTSGPV+  VLE ENAI   R L+G T+ K+A
Sbjct:    4 QRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_PSEPG (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain GB-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T ++IKPD ++ N   +I     E+G  I+  ++ +L +  A+ FYAEHS+R FF  L+ +MTSGPV+  VLE ENAI   R L+G T+ K+A
Sbjct:    4 QRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_PSEP1 (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T ++IKPD ++ N   +I     E+G  I+  ++ +L +  A+ FYAEHS R FF  L+ +MTSGPV+  VLE ENAI   R L+G T+ K+A
Sbjct:    4 QRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_PSEMY (Nucleoside diphosphate kinase OS=Pseudomonas mendocina (strain ymp) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T ++IKPD ++ N   EI     ++G  ++  ++V+L E  A  FYAEHS R FF  L+ +MTSGPV+  VLE E+A+   R L+G T+ K+A
Sbjct:    4 QRTFSIIKPDAVAKNVIGEITTRFEKAGLRVVASKMVQLSEREAAGFYAEHSERGFFKDLVAFMTSGPVIVQVLEGEDAVLKNRELMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_PSEE4 (Nucleoside diphosphate kinase OS=Pseudomonas entomophila (strain L48) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T ++IKPD ++ N   +I     E+G  I+  ++ +L +  A+ FYAEHS+R FF  L+ +MTSGPV+  VLE ENAI   R L+G T+ K+A
Sbjct:    4 QRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEA 98          
The following BLAST results are available for this feature:
BLAST of EY736446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ALCBS3.082e-1543.16Nucleoside diphosphate kinase OS=Alcanivorax borku... [more]
NDK_HAEDU3.546e-1534.91Nucleoside diphosphate kinase OS=Haemophilus ducre... [more]
NDK_WOLPP4.025e-1541.05Nucleoside diphosphate kinase OS=Wolbachia pipient... [more]
NDK_VIBSL4.025e-1542.11Nucleoside diphosphate kinase OS=Vibrio splendidus... [more]
NDK_SHEDO4.025e-1541.05Nucleoside diphosphate kinase OS=Shewanella denitr... [more]
NDK_PSEPK4.025e-1543.16Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEPG4.025e-1543.16Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEP14.025e-1543.16Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEMY4.025e-1542.11Nucleoside diphosphate kinase OS=Pseudomonas mendo... [more]
NDK_PSEE44.025e-1543.16Nucleoside diphosphate kinase OS=Pseudomonas entom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736446 ID=EY736446; Name=EY736446; organism=Citrus sinensis; type=EST; length=787bp
TAGGTCACCACGCGTCCGCTCAAAATTTGGTTTTCATATTTATTTATTTC
TTCATTGCTTCTGTATTAAGGTTTCAACAGTGGGAACTTTTGAAATGATT
CTTCGTGTTGTTGGGCTCTTCATTTTGGCCTGCATCTCTTCTCCCTGCAG
GTCTTTGAGCAATGGAAGTGTGGAAAAGGAGAAAACATTGGCTATGATAA
AGCCTGATGGATTGTCTGGTAACTACACTGATGAAATCAAAAAGGTGATT
CTGGAGTCTGGTTTCAGTATTTTGAGGGAAAGAGTGGTTCGACTTGATGA
GGATGGGGCGAAAACCTTTTACGCTGAGCACTCTTCAAGGAGCTTTTTTT
CTAGTCTTATCAAGTACATGACGAGTGGTCCAGTTTTAGCTATGGTTTTG
GAGAAGGAAAATGCCATTACTGATTGGCGTGCTTTGATTGGACCAACTGA
TGCAAAAAAGGCTANAATTTCTCATCCACACAGGTTATATGTGCTCCCAT
TTGGATAAATGTGTACTTGGTTATTATATAAACAGTTTGTGAGATTGACT
TACCTTTGTCACTGTACTTTTCTTTTGTGGCTGGTGATTTCTTGTCCATG
TTCCCTTGAATACTTCCACCATTAGGGCCATGTTCGGCTTGGATTCAGAA
AACAATTGTGTTCATGGGTTCTGACTCTCCGTGAGCGGCCCGAGGAGAGA
TGTCTTTTTTCTCTCAAGAGGTGTCTGCCCATGAGGTGAGGTGAAACAAT
GACTGGTGGGTGGGAAGCCCTTGAAGAAGAGCATGGG
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