EY736446

Overview
NameEY736446
Unique NameEY736446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SHEAM (Nucleoside diphosphate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD ++ N+   I      +G  I+  ++V L ++ A+ FYAEHS R FF +L+ +MTSGP++  VLE ENA+   R ++G T+  +A
Sbjct:    4 ERTFSIIKPDAVAKNHIGAIYNRFESAGLKIIAAKMVHLTKEQAEGFYAEHSERPFFGALVSFMTSGPIMVQVLEGENAVLANREIMGATNPAQA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SACD2 (Nucleoside diphosphate kinase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL+++KPD +  N   ++     ++G  I+  +++ L E+ A+ FYAEH  R FF+ L+++MTSGPV+  VLE ENAI   R L+G T+  +A
Sbjct:    4 ERTLSIVKPDAVEKNIIGKVISRFEKAGLKIVAAKMMHLTEEKARGFYAEHEGRPFFAGLVEFMTSGPVVVQVLEGENAIALNRELMGATNPAEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_RHOPS (Nucleoside diphosphate kinase OS=Rhodopseudomonas palustris (strain BisB5) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T +++KPD    N T  I  +I ++G  I+ ++ + +    A+TFYA H  R FF  L+ +M SGPV+  VLE ENAI  +R ++G TD  KA
Sbjct:    4 QRTFSILKPDATERNITGAINALIEKAGLRIVAQKRIHMTRGQAETFYAVHKERPFFGELVDFMISGPVVVQVLEGENAIAKYRDVMGATDPSKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            ++T ++IKPD ++ N   +I     E+G  ++  ++ +L +  A+ FYAEHS R FF  L+ +MTSGPV+  VLE ENAI   R L+G T+ K+A
Sbjct:    4 QRTFSIIKPDAVAKNVIGKIVSRFEEAGLRVVASKMKQLSKAEAEGFYAEHSERGFFGELVAFMTSGPVVVQVLEGENAIVRNRELMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_FRAP2 (Nucleoside diphosphate kinase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 40/98 (40.82%), Postives = 63/98 (64.29%), Query Frame = 2
Query:  170 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            + K++TL++IKPD +  N   EI +   +SG  ++  ++  L +  A+ FYA H  R FFS+L+++M SGPV+  VLE +NAI   R L+G T+ K+A
Sbjct:    1 MNKQRTLSIIKPDAVEKNIIGEIYRRFEKSGLKVVAAKMKHLSKAEAEGFYAVHKDRPFFSALVEFMISGPVMIQVLEGDNAIAKNRKLMGATNPKEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_DECAR (Nucleoside diphosphate kinase OS=Dechloromonas aromatica (strain RCB) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD ++ N   +I      +G  ++  R+  L E  A  FY+ H  R FF  L+ +MTSGPV+   LE ENAI   R L+G TD KKA
Sbjct:    4 ERTLSIIKPDAVAKNVIGKIYSRFESNGLKVIAARMTWLSEQEAGQFYSVHKERPFFKDLVSFMTSGPVMIQALEGENAIAKNRELMGATDPKKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_CHLPB (Nucleoside diphosphate kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLY 490
            E+TL ++KPD +       +   I  +GF ++  +  +L  + A  FYA H  R FF  L+++M+SGP + M+LEKENA+ D+R LIG TD  +A      +LY
Sbjct:    2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTKLTTETAGAFYAVHRERPFFGELVEFMSSGPCVPMILEKENAVEDFRKLIGATDPAEAEEGTVRKLY 105          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_AZOC5 (Nucleoside diphosphate kinase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD    N T  I  VI ++G  I+ ++ +++ +  A+ FYA HS+R FF+ L+ +MTSGPV+  VLE E+A+  +R ++G T+   A
Sbjct:    4 ERTFSIIKPDATRRNLTGAINAVIEKAGLRIVAQKRIQMTKAQAEAFYAVHSARPFFNDLVSFMTSGPVVVQVLEGEDAVAKYREVMGATNPANA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SHEB9 (Nucleoside diphosphate kinase OS=Shewanella baltica (strain OS195) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD ++ N+   I      +G  I+  +++ L ++ A+ FYAEHS R FF +L+ +MTSGP++  VLE ENA+   R ++G T+  +A
Sbjct:    4 ERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVASKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SHEB8 (Nucleoside diphosphate kinase OS=Shewanella baltica (strain OS185) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD ++ N+   I      +G  I+  +++ L ++ A+ FYAEHS R FF +L+ +MTSGP++  VLE ENA+   R ++G T+  +A
Sbjct:    4 ERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVASKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQA 98          
The following BLAST results are available for this feature:
BLAST of EY736446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SHEAM8.968e-1540.00Nucleoside diphosphate kinase OS=Shewanella amazon... [more]
NDK_SACD28.968e-1541.05Nucleoside diphosphate kinase OS=Saccharophagus de... [more]
NDK_RHOPS8.968e-1540.00Nucleoside diphosphate kinase OS=Rhodopseudomonas ... [more]
NDK_PSEF58.968e-1542.11Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_FRAP28.968e-1540.82Nucleoside diphosphate kinase OS=Francisella philo... [more]
NDK_DECAR8.968e-1543.16Nucleoside diphosphate kinase OS=Dechloromonas aro... [more]
NDK_CHLPB8.968e-1538.46Nucleoside diphosphate kinase OS=Chlorobium phaeob... [more]
NDK_AZOC58.968e-1540.00Nucleoside diphosphate kinase OS=Azorhizobium caul... [more]
NDK_SHEB91.171e-1438.95Nucleoside diphosphate kinase OS=Shewanella baltic... [more]
NDK_SHEB81.171e-1438.95Nucleoside diphosphate kinase OS=Shewanella baltic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736446 ID=EY736446; Name=EY736446; organism=Citrus sinensis; type=EST; length=787bp
TAGGTCACCACGCGTCCGCTCAAAATTTGGTTTTCATATTTATTTATTTC
TTCATTGCTTCTGTATTAAGGTTTCAACAGTGGGAACTTTTGAAATGATT
CTTCGTGTTGTTGGGCTCTTCATTTTGGCCTGCATCTCTTCTCCCTGCAG
GTCTTTGAGCAATGGAAGTGTGGAAAAGGAGAAAACATTGGCTATGATAA
AGCCTGATGGATTGTCTGGTAACTACACTGATGAAATCAAAAAGGTGATT
CTGGAGTCTGGTTTCAGTATTTTGAGGGAAAGAGTGGTTCGACTTGATGA
GGATGGGGCGAAAACCTTTTACGCTGAGCACTCTTCAAGGAGCTTTTTTT
CTAGTCTTATCAAGTACATGACGAGTGGTCCAGTTTTAGCTATGGTTTTG
GAGAAGGAAAATGCCATTACTGATTGGCGTGCTTTGATTGGACCAACTGA
TGCAAAAAAGGCTANAATTTCTCATCCACACAGGTTATATGTGCTCCCAT
TTGGATAAATGTGTACTTGGTTATTATATAAACAGTTTGTGAGATTGACT
TACCTTTGTCACTGTACTTTTCTTTTGTGGCTGGTGATTTCTTGTCCATG
TTCCCTTGAATACTTCCACCATTAGGGCCATGTTCGGCTTGGATTCAGAA
AACAATTGTGTTCATGGGTTCTGACTCTCCGTGAGCGGCCCGAGGAGAGA
TGTCTTTTTTCTCTCAAGAGGTGTCTGCCCATGAGGTGAGGTGAAACAAT
GACTGGTGGGTGGGAAGCCCTTGAAGAAGAGCATGGG
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