EY736446

Overview
NameEY736446
Unique NameEY736446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_BRUO2 (Nucleoside diphosphate kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVLPFG 505
            E+T +MIKPD    N T  I   + E+G  ++  + V +    A+ FY  H  R FF  L+++M+SGP +  VLE ENAI   R ++G T+   A      + + L  G
Sbjct:    4 ERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYTVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIG 112          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_BAUCH (Nucleoside diphosphate kinase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTD 451
            E+TL++IKP+ +  N    I    + + F+I+  +++ L +  AK FY EH  +SFF+ LI +M SGP++ +VLE  +AI   R +IG T+
Sbjct:    4 ERTLSIIKPNAIKNNALGTIIHRFISANFNIIGMKMLHLTKAQAKGFYTEHQHKSFFNDLINFMISGPIVVLVLESPDAIRRNRDIIGATN 94          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  155 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTD 451
            +S   V KE+T   +KPDG++     EI     + GF ++  + +   +D A++ YAEH  R FF  L+ ++TSGPV+AMV E +  +   R +IG T+
Sbjct:    1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTN 99          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T   IKPDG+       I + +   G+ ++  ++V++ ++ A+  YAEH  R FF SL+K++TSGPV+AMV + +  I   R LIG T+  +A
Sbjct:    2 ERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEA 96          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_SULNB (Nucleoside diphosphate kinase OS=Sulfurovum sp. (strain NBC37-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD ++ N   +I      +G  I   +  RL    A+ FYA H+ R FF  L+ +M SGPV+  VLE ENA+   R L+G T+  +A
Sbjct:    2 EQTLSIIKPDAVAKNVIGQILARFEAAGLRIAATKKTRLSRVDAEAFYAIHAERPFFKDLVDFMISGPVVVTVLEGENAMAKNRELMGATNPAEA 96          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  173 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTD 451
            + E+T  M+KPDG+      +I     + G  ++  + +++D++ A+  YAEH  + FF  L +++TSGPV AMV E ++A+   R ++G TD
Sbjct:    3 DTERTFVMVKPDGVQRGLIGDIVSRFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGETD 95          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_MYCPA (Nucleoside diphosphate kinase OS=Mycobacterium paratuberculosis GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTD 451
            E+TL +IKPDG+      EI   I   G +++   +  + +D A   YAEH  + FF+SL++++TSGPV+A ++E   AI  +R L G TD
Sbjct:    3 ERTLVLIKPDGVQRQLVGEIIGRIERKGLTLVALELRHVSQDLAAQHYAEHEGKPFFASLLEFITSGPVVAAIVEGPRAIAAFRQLAGGTD 93          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_MYCA1 (Nucleoside diphosphate kinase OS=Mycobacterium avium (strain 104) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTD 451
            E+TL +IKPDG+      EI   I   G +++   +  + +D A   YAEH  + FF+SL++++TSGPV+A ++E   AI  +R L G TD
Sbjct:    3 ERTLVLIKPDGVQRQLVGEIIGRIERKGLTLVALELRHVSQDLAAQHYAEHEGKPFFASLLEFITSGPVVAAIVEGPRAIAAFRQLAGGTD 93          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_MOOTA (Nucleoside diphosphate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T +MIKP+G+       I   + + G+ I+  +++RL  + A   YAEH  + F+  LI ++TSGPV+AMVLE    I   R L+G T+ ++A
Sbjct:    4 ERTFSMIKPEGVRRGLVGAILARLEQKGYRIVALKMLRLTPEMAAAHYAEHRDKPFYQDLINHITSGPVVAMVLEGPGVIAGLRRLMGATNPQEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T  M+KPDG+      EI     + GF ++  +++++  + A+T Y EH  + FF  L+ ++TSGPV+AMV E +  I   R ++G T+  KA
Sbjct:    2 ERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPVVAMVWEGKEVIATAREMMGATNPLKA 96          
The following BLAST results are available for this feature:
BLAST of EY736446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BRUO25.440e-1234.86Nucleoside diphosphate kinase OS=Brucella ovis (st... [more]
NDK_BAUCH5.440e-1238.46Nucleoside diphosphate kinase OS=Baumannia cicadel... [more]
NDKC_DICDI5.440e-1236.36Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK_SYNJB7.105e-1237.89Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SULNB7.105e-1240.00Nucleoside diphosphate kinase OS=Sulfurovum sp. (s... [more]
NDK_NATPD7.105e-1234.41Nucleoside diphosphate kinase OS=Natronomonas phar... [more]
NDK_MYCPA7.105e-1239.56Nucleoside diphosphate kinase OS=Mycobacterium par... [more]
NDK_MYCA17.105e-1239.56Nucleoside diphosphate kinase OS=Mycobacterium avi... [more]
NDK_MOOTA7.105e-1237.89Nucleoside diphosphate kinase OS=Moorella thermoac... [more]
NDK_CARHZ7.105e-1235.79Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736446 ID=EY736446; Name=EY736446; organism=Citrus sinensis; type=EST; length=787bp
TAGGTCACCACGCGTCCGCTCAAAATTTGGTTTTCATATTTATTTATTTC
TTCATTGCTTCTGTATTAAGGTTTCAACAGTGGGAACTTTTGAAATGATT
CTTCGTGTTGTTGGGCTCTTCATTTTGGCCTGCATCTCTTCTCCCTGCAG
GTCTTTGAGCAATGGAAGTGTGGAAAAGGAGAAAACATTGGCTATGATAA
AGCCTGATGGATTGTCTGGTAACTACACTGATGAAATCAAAAAGGTGATT
CTGGAGTCTGGTTTCAGTATTTTGAGGGAAAGAGTGGTTCGACTTGATGA
GGATGGGGCGAAAACCTTTTACGCTGAGCACTCTTCAAGGAGCTTTTTTT
CTAGTCTTATCAAGTACATGACGAGTGGTCCAGTTTTAGCTATGGTTTTG
GAGAAGGAAAATGCCATTACTGATTGGCGTGCTTTGATTGGACCAACTGA
TGCAAAAAAGGCTANAATTTCTCATCCACACAGGTTATATGTGCTCCCAT
TTGGATAAATGTGTACTTGGTTATTATATAAACAGTTTGTGAGATTGACT
TACCTTTGTCACTGTACTTTTCTTTTGTGGCTGGTGATTTCTTGTCCATG
TTCCCTTGAATACTTCCACCATTAGGGCCATGTTCGGCTTGGATTCAGAA
AACAATTGTGTTCATGGGTTCTGACTCTCCGTGAGCGGCCCGAGGAGAGA
TGTCTTTTTTCTCTCAAGAGGTGTCTGCCCATGAGGTGAGGTGAAACAAT
GACTGGTGGGTGGGAAGCCCTTGAAGAAGAGCATGGG
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