EY736446

Overview
NameEY736446
Unique NameEY736446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_VIBCH (Nucleoside diphosphate kinase OS=Vibrio cholerae GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD +  N   EI   I ++G  I+  ++V L E+ A  FYAEH  + FF  L ++MTSGP++  VLE ENAI  +R L+G T+ ++A
Sbjct:    4 ERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_VIBC3 (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD +  N   EI   I ++G  I+  ++V L E+ A  FYAEH  + FF  L ++MTSGP++  VLE ENAI  +R L+G T+ ++A
Sbjct:    4 ERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_NITWN (Nucleoside diphosphate kinase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVLPFG 505
            E+T +++KPD  + N T  I  +I ++G  I+ ++ +R+  + A+TFYA H +R FF  L+ +M SGPV+  VLE E AI  +R ++G TD  KA      +L+    G
Sbjct:    4 ERTFSILKPDATARNLTGAINALIEKAGLRIVAQKRIRMTREQAETFYAVHKARPFFGELVDFMISGPVVVQVLEGEGAILKYRDIMGATDPSKAADGTIRKLHAKSVG 112          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_GLUDA (Nucleoside diphosphate kinase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD    N T +I  V  ++G  I+ ++ V+L E  A  FYA H  R F+  L+ +M SGPV+  VLE ENA+   R ++G TD KKA
Sbjct:    4 ERTLSIIKPDATRRNLTGKINAVFEDAGLRIVAQKRVQLSEAEAGAFYAVHKDRPFYGELVSFMVSGPVVLQVLEGENAVLKHRDVMGATDPKKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_FLAJ1 (Nucleoside diphosphate kinase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  182 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVLPFG 505
            +T  MIKPD ++  +   I  +I   GF I+  ++ +L    AK FYA H+ R F+  L+++M+ GP++A +LEK+NA+ D+R LIG T+  +A      + Y    G
Sbjct:    5 RTFTMIKPDAVANGHIGNILAMITNGGFKIVSLKLTQLTVADAKAFYAVHAERPFYGELVEFMSRGPIVAAILEKDNAVEDFRTLIGATNPAEAAEGTIRKAYATSIG 112          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_CHLPD (Nucleoside diphosphate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLY 490
            E+TL ++KPD +       +   I  +GF I+  +  RL ++ A  FYA H  R F+  L+++M+SGP + M+LEKENA+ D+R LIG TD  +A      +LY
Sbjct:    2 ERTLTILKPDCVKKQLIGAVTDKIERAGFRIIAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVRKLY 105          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_VIBVY (Nucleoside diphosphate kinase OS=Vibrio vulnificus (strain YJ016) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD +  N   EI   I ++G  I+  ++V L+++ A  FYAEH  + FF +L ++MTSGP++  VLE ENAI  +R L+G T+ ++A
Sbjct:    4 ERTFSIIKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_VIBVU (Nucleoside diphosphate kinase OS=Vibrio vulnificus GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD +  N   EI   I ++G  I+  ++V L+++ A  FYAEH  + FF +L ++MTSGP++  VLE ENAI  +R L+G T+ ++A
Sbjct:    4 ERTFSIIKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_VIBPA (Nucleoside diphosphate kinase OS=Vibrio parahaemolyticus GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T +++KPD +  N   EI   I ++G  I+  ++V L E+ A  FYAEH  + FF  L ++MTSGP++  VLE ENAI  +R L+G T+ ++A
Sbjct:    4 ERTFSIVKPDAVERNLIGEIYNRIEKAGLRIIAAKMVHLTEEQASGFYAEHEGKEFFQPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_GRABC (Nucleoside diphosphate kinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ndk PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD    N T  I  V  E+G  I+ ++ V+L +  A+ FY  H  R FF+ L+ +M SGPV+  VLE ENA+   R L+G TD KKA
Sbjct:    4 ERTFSIIKPDATRRNLTGRINAVFEENGLRIVAQKRVQLSQAQAEAFYGVHRERPFFNDLVSFMISGPVVVQVLEGENAVARNRELMGATDPKKA 98          
The following BLAST results are available for this feature:
BLAST of EY736446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_VIBCH1.059e-1543.16Nucleoside diphosphate kinase OS=Vibrio cholerae G... [more]
NDK_VIBC31.059e-1543.16Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]
NDK_NITWN1.059e-1537.61Nucleoside diphosphate kinase OS=Nitrobacter winog... [more]
NDK_GLUDA1.059e-1544.21Nucleoside diphosphate kinase OS=Gluconacetobacter... [more]
NDK_FLAJ11.059e-1536.11Nucleoside diphosphate kinase OS=Flavobacterium jo... [more]
NDK_CHLPD1.059e-1539.42Nucleoside diphosphate kinase OS=Chlorobium phaeob... [more]
NDK_VIBVY1.384e-1542.11Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_VIBVU1.384e-1542.11Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_VIBPA1.384e-1542.11Nucleoside diphosphate kinase OS=Vibrio parahaemol... [more]
NDK_GRABC1.384e-1544.21Nucleoside diphosphate kinase OS=Granulibacter bet... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736446 ID=EY736446; Name=EY736446; organism=Citrus sinensis; type=EST; length=787bp
TAGGTCACCACGCGTCCGCTCAAAATTTGGTTTTCATATTTATTTATTTC
TTCATTGCTTCTGTATTAAGGTTTCAACAGTGGGAACTTTTGAAATGATT
CTTCGTGTTGTTGGGCTCTTCATTTTGGCCTGCATCTCTTCTCCCTGCAG
GTCTTTGAGCAATGGAAGTGTGGAAAAGGAGAAAACATTGGCTATGATAA
AGCCTGATGGATTGTCTGGTAACTACACTGATGAAATCAAAAAGGTGATT
CTGGAGTCTGGTTTCAGTATTTTGAGGGAAAGAGTGGTTCGACTTGATGA
GGATGGGGCGAAAACCTTTTACGCTGAGCACTCTTCAAGGAGCTTTTTTT
CTAGTCTTATCAAGTACATGACGAGTGGTCCAGTTTTAGCTATGGTTTTG
GAGAAGGAAAATGCCATTACTGATTGGCGTGCTTTGATTGGACCAACTGA
TGCAAAAAAGGCTANAATTTCTCATCCACACAGGTTATATGTGCTCCCAT
TTGGATAAATGTGTACTTGGTTATTATATAAACAGTTTGTGAGATTGACT
TACCTTTGTCACTGTACTTTTCTTTTGTGGCTGGTGATTTCTTGTCCATG
TTCCCTTGAATACTTCCACCATTAGGGCCATGTTCGGCTTGGATTCAGAA
AACAATTGTGTTCATGGGTTCTGACTCTCCGTGAGCGGCCCGAGGAGAGA
TGTCTTTTTTCTCTCAAGAGGTGTCTGCCCATGAGGTGAGGTGAAACAAT
GACTGGTGGGTGGGAAGCCCTTGAAGAAGAGCATGGG
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