EY736446

Overview
NameEY736446
Unique NameEY736446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_ANADE (Nucleoside diphosphate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPDG+      +I     E G   +  R+ +L +  A+ FYA H +R FF+ L+K+MTSGPV+ MVLE ENA+   R ++G TD KKA
Sbjct:    4 ERTLSIIKPDGVEKGIIGKIIGRFEEKGLKPVAIRLTQLSKAEAEGFYAVHKARPFFADLVKFMTSGPVVLMVLEGENAVARNREIMGATDPKKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK1_PARUW (Nucleoside diphosphate kinase 1 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk1 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD +  NY  EI     ++G  I   ++  L +D A  FYA H  R F++ L+ +M+SGPV+ MVLE   AI   R L+G TD KKA
Sbjct:    4 EQTLSIIKPDAVQNNYIGEIISRFEQAGLKIAAIKMTTLTKDQASKFYAIHKDRPFYNDLVNFMSSGPVVVMVLEGNQAIAKNRELMGATDPKKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_XANP2 (Nucleoside diphosphate kinase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD    N T  +  VI  +G  I+ ++ + + +  A+TFYA HS+R FF  L+ +MTSGPV+  VLE ENA+  +R ++G T+   A
Sbjct:    4 ERTFSIIKPDATRRNLTGAVNAVIETAGLRIVAQKRILMTKAQAETFYAVHSARPFFGDLVSFMTSGPVVVQVLEAENAVAKYREVMGATNPANA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_STAMF (Nucleoside diphosphate kinase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL +IKPDG+      EI       G  I   +++RL  + A+ FY+ H  + FF SLI++MTSGP++AM+LE + AI+  R +IGPTD ++A
Sbjct:    4 ERTLVLIKPDGVRRGLIGEIISRFERKGLKIKALKMLRLTREKAEEFYSVHRGKPFFVSLIEFMTSGPIIAMILEGDMAISVVRRMIGPTDGREA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_METRJ (Nucleoside diphosphate kinase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T +++KPD    N T  +  VI E+G  I+ +R +R+ ++ A+ FY  H  R FF  L+ +MTSGPV+  VLE ENA+  +R ++G T+  +A
Sbjct:    4 ERTFSILKPDATRRNLTGAVNAVIEEAGLRIVGQRRIRMTKEQAEKFYEVHKERPFFGELVTFMTSGPVVVQVLEGENAVAKYREVMGATNPAQA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_CHLT3 (Nucleoside diphosphate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLY 490
            E+TLA++KPD +  N      + I  +GF ++  ++ RL ++ A  FYA H +R F+  L+++M+SG  + ++LEKENA+ D+R LIG TD  +A      +LY
Sbjct:    2 ERTLAILKPDCVRKNLIGAAIEKIQSAGFKVVAMKMTRLTKETAGEFYAVHKARPFYGELVEFMSSGACVPLMLEKENAVADFRTLIGATDPAEAAEGTIRKLY 105          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_CHLL2 (Nucleoside diphosphate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLY 490
            E+TL ++KPD +       +   I  +GF ++  +  RL ++ A  FYA H  R F+  L+++M+SGP + M+LEKENA+ D+R LIG TD  +A      +LY
Sbjct:    2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTQETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAQADEGTVRKLY 105          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_BURPP (Nucleoside diphosphate kinase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD ++ N   +I      +G  I+  R+V L    A+ FYA H++R FF  L+ +M SGPV+   LE ENAI   R L+G TD KKA
Sbjct:    4 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVASRMVHLSRADAEKFYAVHAARPFFKDLVDFMISGPVVVQALEGENAILKHRDLMGATDPKKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_ANASK (Nucleoside diphosphate kinase OS=Anaeromyxobacter sp. (strain K) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPDG+      +I     E G   +  R+ +L +  A+ FYA H +R FF  L+K+MTSGPV+ MVLE ENA+   R ++G TD KKA
Sbjct:    4 ERTLSIIKPDGVEKGIIGKIIGRFEEKGLKPVAIRLTQLSKAEAEGFYAVHKARPFFGDLVKFMTSGPVVLMVLEGENAVARNREIMGATDPKKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_ANAD2 (Nucleoside diphosphate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPDG+      +I     E G   +  R+ +L +  A+ FYA H +R FF  L+K+MTSGPV+ MVLE ENA+   R ++G TD KKA
Sbjct:    4 ERTLSIIKPDGVEKGIIGKIIGRFEEKGLKPVAIRLTQLSKAEAEGFYAVHKARPFFGDLVKFMTSGPVVLMVLEGENAVARNREIMGATDPKKA 98          
The following BLAST results are available for this feature:
BLAST of EY736446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ANADE2.360e-1545.26Nucleoside diphosphate kinase OS=Anaeromyxobacter ... [more]
NDK1_PARUW2.360e-1544.21Nucleoside diphosphate kinase 1 OS=Protochlamydia ... [more]
NDK_XANP23.082e-1541.05Nucleoside diphosphate kinase OS=Xanthobacter auto... [more]
NDK_STAMF3.082e-1543.16Nucleoside diphosphate kinase OS=Staphylothermus m... [more]
NDK_METRJ3.082e-1540.00Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_CHLT33.082e-1538.46Nucleoside diphosphate kinase OS=Chloroherpeton th... [more]
NDK_CHLL23.082e-1538.46Nucleoside diphosphate kinase OS=Chlorobium limico... [more]
NDK_BURPP3.082e-1544.21Nucleoside diphosphate kinase OS=Burkholderia phyt... [more]
NDK_ANASK3.082e-1545.26Nucleoside diphosphate kinase OS=Anaeromyxobacter ... [more]
NDK_ANAD23.082e-1545.26Nucleoside diphosphate kinase OS=Anaeromyxobacter ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736446 ID=EY736446; Name=EY736446; organism=Citrus sinensis; type=EST; length=787bp
TAGGTCACCACGCGTCCGCTCAAAATTTGGTTTTCATATTTATTTATTTC
TTCATTGCTTCTGTATTAAGGTTTCAACAGTGGGAACTTTTGAAATGATT
CTTCGTGTTGTTGGGCTCTTCATTTTGGCCTGCATCTCTTCTCCCTGCAG
GTCTTTGAGCAATGGAAGTGTGGAAAAGGAGAAAACATTGGCTATGATAA
AGCCTGATGGATTGTCTGGTAACTACACTGATGAAATCAAAAAGGTGATT
CTGGAGTCTGGTTTCAGTATTTTGAGGGAAAGAGTGGTTCGACTTGATGA
GGATGGGGCGAAAACCTTTTACGCTGAGCACTCTTCAAGGAGCTTTTTTT
CTAGTCTTATCAAGTACATGACGAGTGGTCCAGTTTTAGCTATGGTTTTG
GAGAAGGAAAATGCCATTACTGATTGGCGTGCTTTGATTGGACCAACTGA
TGCAAAAAAGGCTANAATTTCTCATCCACACAGGTTATATGTGCTCCCAT
TTGGATAAATGTGTACTTGGTTATTATATAAACAGTTTGTGAGATTGACT
TACCTTTGTCACTGTACTTTTCTTTTGTGGCTGGTGATTTCTTGTCCATG
TTCCCTTGAATACTTCCACCATTAGGGCCATGTTCGGCTTGGATTCAGAA
AACAATTGTGTTCATGGGTTCTGACTCTCCGTGAGCGGCCCGAGGAGAGA
TGTCTTTTTTCTCTCAAGAGGTGTCTGCCCATGAGGTGAGGTGAAACAAT
GACTGGTGGGTGGGAAGCCCTTGAAGAAGAGCATGGG
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