EY736386 | Citrus Genome Database

Overview


Name	EY736386
Unique Name	EY736386
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	870

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.759e-45
Identity = 89/148 (60.14%), Postives = 104/148 (70.27%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPT*TLFLMAS 801
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG FKG I+    + L +N K I  + +RDPA IPWG  GVDYVVES+GVFTT  KA AH+ GGAKKV+ISAPSADAPMFV+GVNEK+Y+P  ++   AS
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVIISAPSADAPMFVMGVNEKSYRPDISVLSNAS 151

HSP 2 Score: 22.3274 bits (46), Expect = 9.759e-45
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI EG+
Sbjct:  157 LAPLAKVIHDNFGIAEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 9.760e-45
Identity = 88/137 (64.23%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+  Y  YMFKYDSTHG FKG IKV D   L I+GK IK + +RDPA IPW D G +Y+VES+GVFTT  KASAH KGGAKKV+ISAPSADAPM+V+GVNE TY
Sbjct:    4 KVGINGFGRIGRVVLRNALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAPSADAPMYVMGVNEDTY 139

HSP 2 Score: 28.4906 bits (62), Expect = 9.760e-45
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:  759 KDIQANMNIVSNGKCTTNGLLLLAR 833
            +D  A  N++SN  CTTN L  LA+
Sbjct:  136 EDTYAGANVISNASCTTNCLAPLAK 160

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.170e-44
Identity = 85/137 (62.04%), Postives = 100/137 (72.99%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA-ENGKLVINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 1.170e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 1.170e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDNFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.170e-44
Identity = 85/137 (62.04%), Postives = 100/137 (72.99%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 1.170e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 1.170e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDHFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 1.522e-44
Identity = 85/137 (62.04%), Postives = 100/137 (72.99%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 1.522e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 1.522e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDHFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 2.575e-44
Identity = 85/137 (62.04%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L INGK I +F +RDPA I WGD G  YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 2.575e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 2.575e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDHFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 4.354e-44
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 1

Query:  349 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            G  KVGINGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L ING  I +F +RDP++I WGD G +YVVES+GVFTT+ KA AH++GGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    2 GKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY 140

HSP 2 Score: 25.0238 bits (53), Expect = 4.354e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  143 SLKIVSNASCTTNCLAPLAK 162

HSP 3 Score: 23.0978 bits (48), Expect = 4.354e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  157 LAPLAKVIHDNFGIVEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.355e-44
Identity = 86/137 (62.77%), Postives = 100/137 (72.99%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            K+G+NGFGRIGRL                NDPFID  YM YMFKYDSTHG F GT+K  ++  L ING+ I +F +RDPA I WGD G +YVVES+GVFTT  KASAH+KGGAK+VVISAPSADAPMFV+GVN + Y
Sbjct:    3 KIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRFHGTVKA-ENGKLVINGQAITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 24.6386 bits (52), Expect = 4.355e-44
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ +VSN  CTTN L  LA+
Sbjct:  141 SLKVVSNASCTTNCLAPLAK 160

HSP 3 Score: 20.7866 bits (42), Expect = 4.355e-44
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + +G++EG+
Sbjct:  155 LAPLAKVIHDNYGMVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 4.355e-44
Identity = 84/137 (61.31%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FKGT+K  ++  L ING  I +F +RDP+ I W D G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKA-ENGKLVINGHAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 4.355e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 4.355e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDNFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 4.780e-44
Identity = 85/137 (62.04%), Postives = 104/137 (75.91%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+ KY AYM +YD+THG FKGTI+V D + L +NGK +K +++RDPA IPW + G DY+VES+GVFTT  KASAH+KGGAKKV+ISAPSADAPM+V+GVN +TY
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFKGTIEV-DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNETY 139

HSP 2 Score: 23.483 bits (49), Expect = 4.780e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3

Query:  780 NIVSNGKCTTNGLLLLAR 833
            +++SN  CTTN L  LA+
Sbjct:  144 DVISNASCTTNCLAPLAK 161

The following BLAST results are available for this feature:

BLAST of EY736386 vs. ExPASy Swiss-Prot

BLAST of EY736386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336


Match Name	E-value	Identity	Description
G3P_PARBA	9.759e-45	60.14	Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco...	[more]
G3P1_TRIKO	9.760e-45	64.23	Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric...	[more]
G3P_RAT	1.170e-44	62.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus...	[more]
G3P_RABIT	1.170e-44	62.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto...	[more]
G3P_FELCA	1.522e-44	62.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ...	[more]
G3P_PIG	2.575e-44	62.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc...	[more]
G3P_PONAB	4.354e-44	60.00	Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ...	[more]
G3P_TRISI	4.355e-44	62.77	Glyceraldehyde-3-phosphate dehydrogenase OS=Triony...	[more]
G3P_CHICK	4.355e-44	61.31	Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus...	[more]
G3P_NEUCR	4.780e-44	62.04	Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-705-015-F11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736386 ID=EY736386; Name=EY736386; organism=Citrus sinensis; type=EST; length=870bp
CACGCGTCCGCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGCG
AGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCTT
CTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCACT
TCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTCG
CAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCAT
CTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAGA
GCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATGG
AAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTTT
TGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGAT
CCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTAC
TCATGGAGTTTTCAAGGGAACCATCAAGGTCGTGGATGACTCCACCTTAG
AAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAG
ATCCCTTGGGGTGACTAGGGGGTTGATTATGTTGTTGAATCTTCTGGAGT
CTTTACAACAATTGCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAA
AGGTGGTAATATCAGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGA
GTGAATGAAAAGACATACAAGCCAACATGAACATTGTTTCTAATGGCAAG
TGTACAACCAATGGCTTGCTCCTCCTTGCAAGGGGGTTCAGGAGGAGTTT
GGAATTCTGGAAGGCGTAAG