EY736386 | Citrus Genome Database

Overview


Name	EY736386
Unique Name	EY736386
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	870

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 7.364e-44
Identity = 83/140 (59.29%), Postives = 101/140 (72.14%), Query Frame = 1

Query:  349 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            G  KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L ING  I +F +RDP++I WGD G +YVVES+GVFTT+ KA AH++GGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY 140

HSP 2 Score: 24.6386 bits (52), Expect = 7.364e-44
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ I+SN  CTTN L  LA+
Sbjct:  143 SLKIISNASCTTNCLAPLAK 162

HSP 3 Score: 23.0978 bits (48), Expect = 7.364e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  157 LAPLAKVIHDNFGIVEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 7.365e-44
Identity = 83/137 (60.58%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG F+GT+K  ++  L ING  I +F +RDP+ I W D G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFRGTVKA-ENGKLVINGNAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 7.365e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 7.365e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDNFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 8.117e-44
Identity = 87/138 (63.04%), Postives = 102/138 (73.91%), Query Frame = 1

Query:  355 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            TKVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG FKG IKV+ D  LE+NGK +K +++RDPA IPW +    YVVES+GVFTT  KA AH+KGGAKKVVISAPSADAPM+V+GVN +TY
Sbjct:    4 TKVGINGFGRIGRIVFRNAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIKVLSDG-LEVNGKKVKFYTERDPANIPWAESEAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMYVMGVNNETY 140

HSP 2 Score: 23.483 bits (49), Expect = 8.117e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3

Query:  780 NIVSNGKCTTNGLLLLAR 833
            +++SN  CTTN L  LA+
Sbjct:  145 DVISNASCTTNCLAPLAK 162

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 9.579e-44
Identity = 83/137 (60.58%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+K  ++  L INGK I +F +RDP  I WG+ G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y
Sbjct:    3 KVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA-ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138

HSP 2 Score: 25.0238 bits (53), Expect = 9.579e-44
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ IVSN  CTTN L  LA+
Sbjct:  141 SLKIVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 9.579e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVIHDNFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.619e-43
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G IK  + + L INGK +K +++RDPA IPW + G DYVVES+GVFTT  KA AH++GGAKKV+ISAPSADAPM+V+ VNEK+Y
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQ-EGNDLVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTTTDKAKAHLQGGAKKVIISAPSADAPMYVMVVNEKSY 140

HSP 2 Score: 25.0238 bits (53), Expect = 1.619e-43
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 3

Query:  759 KDIQANMNIVSNGKCTTNGLLLLAR 833
            K    + +++SN  CTTN L  LA+
Sbjct:  138 KSYDGSADVISNASCTTNCLAPLAK 162

HSP 3 Score: 23.483 bits (49), Expect = 1.619e-43
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + ++FGI+EG+
Sbjct:  157 LAPLAKVINDKFGIVEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.796e-43
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKGTI+  D+  + +NGK I+  ++RDPA IPWG  G +Y+VES+GVFTT  KASAH+KGGAKKVVISAPSADAPMFV+GVN +TYK
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFKGTIETYDEGLI-VNGKKIRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPSADAPMFVMGVNNETYK 140

HSP 2 Score: 23.483 bits (49), Expect = 1.796e-43
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  156 LAPLAKVINDNFGIIEGL 173

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.341e-43
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F+GTI+  D+  + +NGK I+ F++RDPA IPWG  G  Y+VES+GVFTT  KASAH+KGGAKKV+ISAPSADAPMFV+GVN K YK
Sbjct:    5 KVGINGFGRIGRIVFRNAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHGRFQGTIETYDEGLI-VNGKKIRFFAERDPAAIPWGSAGAAYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNKEYK 141

HSP 2 Score: 22.3274 bits (46), Expect = 2.341e-43
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FG++EG+
Sbjct:  157 LAPLAKVINDNFGLVEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.341e-43
Identity = 88/139 (63.31%), Postives = 98/139 (70.50%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            KVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG+++V  D  L IN K I VF ++DPA I WG+ G +YVVES+GVFTT  KA  H+KGGAKKVVISAPSADAPMFV GVN   YKP
Sbjct:    4 KVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFKGSVEV-KDGKLYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCGVNLDAYKP 141

HSP 2 Score: 23.8682 bits (50), Expect = 2.341e-43
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  783 IVSNGKCTTNGLLLLAR 833
            IVSN  CTTN L  LA+
Sbjct:  145 IVSNASCTTNCLAPLAK 161

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.341e-43
Identity = 83/137 (60.58%), Postives = 102/137 (74.45%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+ KY  YM +YDSTHG FKGTI  V+ S L +NGK +K +++RDP+ IPW + G DY+VES+GVFTT  KASAH+KGGAKKV+ISAPSADAPM+V+GVN ++Y
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGNFKGTI-AVEGSDLVVNGKKVKFYTERDPSAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNESY 139

HSP 2 Score: 25.409 bits (54), Expect = 2.341e-43
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3

Query:  780 NIVSNGKCTTNGLLLLAR 833
            N++SN  CTTN L  LA+
Sbjct:  144 NVISNASCTTNCLAPLAK 161

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.341e-43
Identity = 84/138 (60.87%), Postives = 102/138 (73.91%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +K  D+  L+++GK ++ + +RDPA IPW + G DYV+ES+GVFTT  KASAH+KGGAKKV+ISAPSADAPMFV+GVN +TYK
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSDNG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYK 140

HSP 2 Score: 22.7126 bits (47), Expect = 2.341e-43
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K V + FG++EG+
Sbjct:  156 LAPLAKVVNDNFGLVEGL 173

The following BLAST results are available for this feature:

BLAST of EY736386 vs. ExPASy Swiss-Prot

BLAST of EY736386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336


Match Name	E-value	Identity	Description
G3P_HUMAN	7.364e-44	59.29	Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s...	[more]
G3P_COLLI	7.365e-44	60.58	Glyceraldehyde-3-phosphate dehydrogenase OS=Columb...	[more]
G3P_SCLSC	8.117e-44	63.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero...	[more]
G3P_MOUSE	9.579e-44	60.58	Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu...	[more]
G3P_COLGL	1.619e-43	61.31	Glyceraldehyde-3-phosphate dehydrogenase OS=Collet...	[more]
G3P_EMENI	1.796e-43	62.32	Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric...	[more]
G3P_ASPOR	2.341e-43	62.32	Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg...	[more]
G3P_CRYNE	2.341e-43	63.31	Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto...	[more]
G3P_SORMA	2.341e-43	60.58	Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar...	[more]
G3P_COCIM	2.341e-43	60.87	Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-705-015-F11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736386 ID=EY736386; Name=EY736386; organism=Citrus sinensis; type=EST; length=870bp
CACGCGTCCGCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGCG
AGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCTT
CTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCACT
TCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTCG
CAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCAT
CTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAGA
GCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATGG
AAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTTT
TGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGAT
CCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTAC
TCATGGAGTTTTCAAGGGAACCATCAAGGTCGTGGATGACTCCACCTTAG
AAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAG
ATCCCTTGGGGTGACTAGGGGGTTGATTATGTTGTTGAATCTTCTGGAGT
CTTTACAACAATTGCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAA
AGGTGGTAATATCAGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGA
GTGAATGAAAAGACATACAAGCCAACATGAACATTGTTTCTAATGGCAAG
TGTACAACCAATGGCTTGCTCCTCCTTGCAAGGGGGTTCAGGAGGAGTTT
GGAATTCTGGAAGGCGTAAG