EY736386 | Citrus Genome Database

Overview


Name	EY736386
Unique Name	EY736386
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	870

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.050e-43
Identity = 90/148 (60.81%), Postives = 103/148 (69.59%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPT*TLFLMAS 801
            KVGINGFGRIGR+                NDPFID +Y AYMFKYDSTHG FKG ++  D   + I+GK I+VF +RDP+ IPWG  G DYVVES+GVFT    ASAH+KGGAKKV+ISAPS DAPMFVVGVN   YKP  T+   AS
Sbjct:    4 KVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDMTVISNAS 150

HSP 2 Score: 23.0978 bits (48), Expect = 3.050e-43
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K V +++GI+EG+
Sbjct:  156 LAPLAKVVNDKYGIIEGL 173

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.562e-43
Identity = 86/138 (62.32%), Postives = 97/138 (70.29%), Query Frame = 1

Query:  361 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            +GINGFGRIGR+                NDPFID +YM YM KYDSTHGVF G I    D  L +NGK I VF+++DP+ IPWG  G  YVVES+GVFTTI KASAH+KGGAKKVVISAPSADAPM+V GVN   Y P
Sbjct:    6 IGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVFNGDIST-KDGKLIVNGKSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAPSADAPMYVCGVNLDAYDP 142

HSP 2 Score: 23.483 bits (49), Expect = 3.562e-43
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  783 IVSNGKCTTNGLLLLAR 833
            +VSN  CTTN L  LA+
Sbjct:  146 VVSNASCTTNCLAPLAK 162

HSP 3 Score: 23.483 bits (49), Expect = 3.562e-43
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + ++FGI+EG+
Sbjct:  157 LAPLAKVIHDKFGIVEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 3.975e-43
Identity = 85/137 (62.04%), Postives = 101/137 (73.72%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKGTI+  ++  + +NGK I+ F++RDPA IPWG  G DY+VES+GVFTT  KA+AH+KGGAKKVVISAPSADAPMFV+GVN  +Y
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIETYEEGLI-VNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSY 139

HSP 2 Score: 23.483 bits (49), Expect = 3.975e-43
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + ++FGI+EG+
Sbjct:  156 LAPLAKVINDKFGIVEGL 173

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.631e-43
Identity = 85/140 (60.71%), Postives = 96/140 (68.57%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKL---IKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG++       +  NGK    I V + +DPAEIPWG  G +YVVES+GVFTT  KASAH+KGGAKKV+ISAPSADAPMFV+GVN   Y
Sbjct:    5 KVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMY 144

HSP 2 Score: 27.335 bits (59), Expect = 4.631e-43
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 3

Query:  768 QANMNIVSNGKCTTNGLLLLAR 833
            +AN +I+SN  CTTN L  LA+
Sbjct:  146 KANNHIISNASCTTNCLAPLAK 167

HSP 3 Score: 23.8682 bits (50), Expect = 4.631e-43
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + ++FGI+EG+
Sbjct:  162 LAPLAKVIHDKFGIIEGL 179

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.633e-43
Identity = 87/138 (63.04%), Postives = 99/138 (71.74%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            KVGINGFG IGRL                NDPFID  YM YMFKYDSTHG FKGT+K  ++  L IN ++I VF +RDP+ I WGD G  YVVES+GVFTT  KAS H+KGGAK+VVISAPSADAPMFVVGVN + Y+
Sbjct:    3 KVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFKGTVKA-ENGKLIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFTTTEKASLHLKGGAKRVVISAPSADAPMFVVGVNHEKYE 139

HSP 2 Score: 24.6386 bits (52), Expect = 4.633e-43
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLAR 833
            ++ +VSN  CTTN L  LA+
Sbjct:  141 SLKVVSNASCTTNCLAPLAK 160

HSP 3 Score: 23.0978 bits (48), Expect = 4.633e-43
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  155 LAPLAKVINDNFGIVEGL 172

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.750e-43
Identity = 83/138 (60.14%), Postives = 102/138 (73.91%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +K  ++  L+++GK ++ + +RDPA IPW + G DYV+ES+GVFTT  KASAH+KGGAKKV+ISAPSADAPMFV+GVN +TYK
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSENG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYK 140

HSP 2 Score: 22.7126 bits (47), Expect = 6.750e-43
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K V + FG++EG+
Sbjct:  156 LAPLAKVVNDNFGLVEGL 173

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.024e-43
Identity = 86/137 (62.77%), Postives = 102/137 (74.45%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G I   D + L INGK +K +++RDPA IPW + G DYVVES+GVFTTI KA AH++GGAKKV+ISAPSADAPM+V+GVNEK+Y
Sbjct:    5 KVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEI-AQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMGVNEKSY 140

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 7.831e-43
Identity = 81/137 (59.12%), Postives = 100/137 (72.99%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG F G I+ V+D  L +N + +K ++KR+P EIPW + G +Y+VES+GVFTT  KA AH+KGGAKKV+ISAPSADAPMFV+GVN K+Y
Sbjct:    5 KVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG-LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMFVMGVNHKSY 140

HSP 2 Score: 25.409 bits (54), Expect = 7.831e-43
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 3

Query:  759 KDIQANMNIVSNGKCTTNGLLLLAR 833
            K    ++ ++SN  CTTN L  LA+
Sbjct:  138 KSYTTDLEVISNASCTTNCLAPLAK 162

HSP 3 Score: 22.3274 bits (46), Expect = 7.831e-43
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + +EF I+EG+
Sbjct:  157 LAPLAKVINDEFTIIEGL 174

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 7.831e-43
Identity = 87/145 (60.00%), Postives = 99/145 (68.28%), Query Frame = 1

Query:  343 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            S G  K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   +KV D +TL    K + VF  R+P EIPWG+ GV+YVVES+GVFT   KA+AH+KGGAKKVVI+APS DAPMFVVGVNE  YKP
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKP 147

HSP 2 Score: 24.6386 bits (52), Expect = 7.831e-43
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 3

Query:  762 DIQANMNIVSNGKCTTNGLLLLAR 833
            + + ++ IVSN  CTTN L  LA+
Sbjct:  144 EYKPDLAIVSNASCTTNCLAPLAK 167

HSP 3 Score: 23.0978 bits (48), Expect = 7.831e-43
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  162 LAPLAKVINDRFGIVEGL 179

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.018e-42
Identity = 86/140 (61.43%), Postives = 96/140 (68.57%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   IKV D+ TL    K + VF  R+P EIPWG  G DYVVES+GVFT   KA+AH+KGGAKKV+ISAPS DAPMFVVGVNE  YKP
Sbjct:    5 KIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKP 144

HSP 2 Score: 25.409 bits (54), Expect = 1.018e-42
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 3

Query:  762 DIQANMNIVSNGKCTTNGLLLLAR 833
            + +  ++IVSN  CTTN L  LA+
Sbjct:  141 EYKPELDIVSNASCTTNCLAPLAK 164

HSP 3 Score: 23.0978 bits (48), Expect = 1.018e-42
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  159 LAPLAKVINDRFGIVEGL 176

The following BLAST results are available for this feature:

BLAST of EY736386 vs. ExPASy Swiss-Prot

BLAST of EY736386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336


Match Name	E-value	Identity	Description
G3P_YARLI	3.050e-43	60.81	Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow...	[more]
G3P_USTMA	3.562e-43	62.32	Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila...	[more]
G3P_ASPNG	3.975e-43	62.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg...	[more]
G3P_BRUMA	4.631e-43	60.71	Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia...	[more]
G3P_XENLA	4.633e-43	63.04	Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu...	[more]
G3P_COCP7	6.750e-43	60.14	Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid...	[more]
G3P_COLLN	7.024e-43	62.77	Glyceraldehyde-3-phosphate dehydrogenase OS=Collet...	[more]
G3P_ERYGR	7.831e-43	59.12	Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip...	[more]
G3PC_GINBI	7.831e-43	60.00	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_DIACA	1.018e-42	61.43	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-705-015-F11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736386 ID=EY736386; Name=EY736386; organism=Citrus sinensis; type=EST; length=870bp
CACGCGTCCGCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGCG
AGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCTT
CTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCACT
TCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTCG
CAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCAT
CTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAGA
GCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATGG
AAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTTT
TGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGAT
CCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTAC
TCATGGAGTTTTCAAGGGAACCATCAAGGTCGTGGATGACTCCACCTTAG
AAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAG
ATCCCTTGGGGTGACTAGGGGGTTGATTATGTTGTTGAATCTTCTGGAGT
CTTTACAACAATTGCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAA
AGGTGGTAATATCAGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGA
GTGAATGAAAAGACATACAAGCCAACATGAACATTGTTTCTAATGGCAAG
TGTACAACCAATGGCTTGCTCCTCCTTGCAAGGGGGTTCAGGAGGAGTTT
GGAATTCTGGAAGGCGTAAG