EY736258

Overview
NameEY736258
Unique NameEY736258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 73/179 (40.78%), Postives = 115/179 (64.25%), Query Frame = 2
Query:   26 MDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKD-ELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            +D+P+GV++++    V+V GP+G+L RDF H      +   EE GK+++ ++ +F +RK  A + T  +H+ N+I GVTKG+RYKM+ V++HFPI+  +      +EI NF+GEK  R   +L GVTV    KV+  ++I++G DIE V+++AA I Q   +   D R F+DGIY+  R
Sbjct:   11 VDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKV--VGDRVEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYIYAR 182          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   17 SETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDM 391
            ++T+D PDGV   +  ++V V GPRG L RDF+HL+++      E  GK +L++  WFG RK  AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  +++EIRNFLGEK VR V +
Sbjct:    7 NDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31
Identity = 70/184 (38.04%), Postives = 113/184 (61.41%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK--KVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSERGQ 565
            E +DIP+ V ++IN   V+V GP+G + RDF H+    +++  +E  K  + ++ +F  R+  A + T  SH+ N+I GV KGYRYK++ +Y+HFPI   + + N+ + I+NFLGEK  ++ K+   D    V+ E    ++I++G DIE V ++AA I     VK+ D R F DGIY+ + G+
Sbjct:    9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDRIAKIIGEDVKVTVKGE----DIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIYDWGE 183          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.991e-30
Identity = 68/185 (36.76%), Postives = 111/185 (60.00%), Query Frame = 2
Query:   17 SETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSERGQYL 571
            +E ++IP+ V ++++   V V+GP+G ++RDF H    F  + D     R + ++ +   RK  A + T  +H+ N+I GV +GYRYK++ +++HFPI  S+   NK + IRNF+GEK  R   +   V V  S    +++I++G DIE V  +AA I +   V + D R F+DGIY+ E+G+ L
Sbjct:    8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVS---GEDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26
Identity = 67/181 (37.02%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            E +++P+GV + I+   V+V GP+G++ RDF H       + D       + ++++F   +  A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NFLGEK +R   ++ GV V    +VK  ++I++G D+E V+++AA I     VK+ D RKF+DGIY+ ER
Sbjct:    9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYER 178          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.006e-26
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            E ++IP+GV++ I   +V+V GP+G+L R+ K+  +         T   K+ I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +      + I NFLGEK  R+  +L GVTV   + +  E+I++G D E V ++AA I Q   +   D R F DGIY+ E+
Sbjct:    9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKV--QGDEVVIENFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.006e-26
Identity = 57/181 (31.49%), Postives = 107/181 (59.12%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            E ++IP G+ + I    ++V+GP+G++ +DF H++    +  ++     K+ ++  F  R+  A   + ++H+ N+  GVTKGYRY ++ +Y HFP+   +  +   ++I+N +GEK +R+  ++ GV V     VK +++I++G DIE V ++AA I     +   D R F DGIY+ ++
Sbjct:    8 EEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKV--SGNEVQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKK 177          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.422e-26
Identity = 67/181 (37.02%), Postives = 106/181 (58.56%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            E ++IP+GV++ +    V+V+GP+G+L R+ K+  +         T   K+ I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +      + I NFLGEK  R+  +L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY+ E+
Sbjct:    9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKV--QGDEVVIENFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.623e-26
Identity = 70/181 (38.67%), Postives = 106/181 (58.56%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            E ++IP+GV++ +    V+V+GP+G++ R+     +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +      + I NFLGEK  R+  +L GVTV    KVK  E+I++G D E V ++AA I Q   +   D R F DGIY+ E+
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of EY736258 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.300e-25
Identity = 66/181 (36.46%), Postives = 105/181 (58.01%), Query Frame = 2
Query:   20 ETMDIPDGVKIKINAKIVEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLINGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNNDMRKFLDGIYVSER 559
            E ++IP+GV++ +   +V+V+GP+G+L R+ K+  +         T   K+ +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +      + I NFLGEK  R+  +L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY+ E+
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKV--QGDEVIIENFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
The following BLAST results are available for this feature:
BLAST of EY736258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_IGNH44.459e-3440.7850S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL9_HAECO3.775e-3352.8060S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_STAMF6.026e-3138.0450S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_DESK12.991e-3036.7650S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_AERPE1.536e-2637.0250S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_THEON2.006e-2637.2250S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_SULTO2.006e-2631.4950S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_PYRKO3.422e-2637.0250S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_PYRAB7.623e-2638.6750S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]
RL6_THEGJ1.300e-2536.4650S ribosomal protein L6P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-H12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736258 ID=EY736258; Name=EY736258; organism=Citrus sinensis; type=EST; length=859bp
CCACCCACGCGTCCGATCAGAGACGATGGACATCCCAGACGGGGTGAAAA
TCAAGATCAATGCTAAGATCGTCGAGGTTGAGGGGCCCAGAGGAAAGCTC
AGCCGGGATTTCAAGCACCTGAATCTCGACTTCCATCTGATGACCGACGA
GGAAACCGGGAAGCGGAAGCTCAAGATCGACGCTTGGTTCGGTTCTCGCA
AGACCAGCGCCGCCATCAGGACTGCCCTCAGCCACGTCGGGAATCTCATC
AACGGTGTCACCAAGGGATACCGCTACAAGATGAGATTCGTCTACGCTCA
CTTCCCCATCAACGCCTCCATCGGCAATGCCAACAAGTCCATCGAGATCC
GAAACTTTCTTGGGGAGAAGAAGGTTCGCAAAGTGGATATGCTTGATGGT
GTTACTGTTGTTCGGTCTGAGAAGGTTAAGGATGAACTCATTCTTGATGG
GAATGACATTGAGCTTGTGTCTCGGTCTGCTGCTCTGATCAACCAGAAAT
GCCATGTGAAGAACAACGACATGAGGAAATTCCTTGACGGGATCTATGTC
AGCGAGAGAGGCCAATATTTGAAGAAAACTGACGACTAGCTCTCAGTATG
ATGAAATTGGTGTGCTTGCTTTTGGAATTTTGCTCTTACCTTGGCTTGAC
GACATGCTGTTGGTCGGATGCGGCGATTACACACAGTCATGCCATCCACT
TGCTGGCTGCTGCTCCTATCGCTACCTTAGAACTATGGATTTTAACCTTC
CCCCTGTGGCAGAACAACCCGCCCACGCGCGCAGGACACCCGGCGGGGGG
CGGCCGCCCCGGGGGCCCCCCCCCCCTTGGGCTGCTTTCAAAGTCTGCGC
CCTCGTGTG
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