EY736244

Overview
NameEY736244
Unique NameEY736244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_PONAB (60 kDa heat shock protein, mitochondrial OS=Pongo abelii GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.950e-37
Identity = 76/101 (75.25%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+PKVTKDGVTVAKSI+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL R+I  EG
Sbjct:   27 AKDVKFGADARALMLRGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_RAT (60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.771e-37
Identity = 76/101 (75.25%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+PKVTKDGVTVAKSI+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL R+I  EG
Sbjct:   27 AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_MOUSE (60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.771e-37
Identity = 76/101 (75.25%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+PKVTKDGVTVAKSI+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL R+I  EG
Sbjct:   27 AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_HUMAN (60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 7.771e-37
Identity = 76/101 (75.25%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+PKVTKDGVTVAKSI+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL R+I  EG
Sbjct:   27 AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_CHICK (60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.771e-37
Identity = 76/101 (75.25%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+PKVTKDGVTVAK+I+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL RAI  EG
Sbjct:   27 AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKAIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.731e-36
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+PKVTKDGVTVAK+I+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL R+I  EG
Sbjct:   27 AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKAIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_BOVIN (60 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.731e-36
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  200 AKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            AKD++FG +ARALML+GV+ LADAV VTMGPKGR V+IEQSWG+P+VTKDGVTVAKSI+ KDK KNIGA LV+ VAN TN+ AGDGTT ATVL R+I  EG
Sbjct:   27 AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPRVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEG 127          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 74/108 (68.52%), Postives = 91/108 (84.26%), Query Frame = 2
Query:  188 RNYAA-KDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            RNY+  KDI+FG E RALML+GVE+LA AV+VT+GPKGRNV+++Q +G PK+TKDGVTVAK IEF D+  N+GA LVK VA++ ND +GDGTT AT+LTRAIF EGCK
Sbjct:   15 RNYSTGKDIKFGAECRALMLRGVEQLAAAVEVTLGPKGRNVILDQPFGQPKITKDGVTVAKHIEFADRHINLGAQLVKGVASSQNDQSGDGTTTATILTRAIFAEGCK 122          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_CAEEL (Chaperonin homolog Hsp-60, mitochondrial OS=Caenorhabditis elegans GN=hsp-60 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.037e-36
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 2
Query:  188 RNYAAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEG 502
            R+YA KD++FG E R  ML GV  LADAV VTMGPKGRNV+IEQSWG+PK+TKDGVTVAKSI+ KDK +N+GA L++ VAN  N+ AGDGTTCATVL RAI  EG
Sbjct:   15 RSYA-KDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNVIIEQSWGSPKITKDGVTVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATVLARAIAKEG 118          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_TRYBB (Chaperonin HSP60, mitochondrial OS=Trypanosoma brucei brucei GN=HSP60 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 8.592e-36
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 2
Query:  194 YAAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            + AKDIRFG EAR  MLKGV+   +AV  T+GPKGRNV+IEQS+GAPK+TKDGVTVAKSIEFKD  +N+GA LV+QV N TND+AGDGTT + VL  +IF+EG K
Sbjct:    8 FGAKDIRFGTEARQSMLKGVQRAVEAVATTLGPKGRNVIIEQSYGAPKITKDGVTVAKSIEFKDPFENMGAQLVRQVCNKTNDLAGDGTTTSAVLVASIFSEGIK 112          
The following BLAST results are available for this feature:
BLAST of EY736244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PONAB5.950e-3775.2560 kDa heat shock protein, mitochondrial OS=Pongo ... [more]
CH60_RAT7.771e-3775.2560 kDa heat shock protein, mitochondrial OS=Rattus... [more]
CH60_MOUSE7.771e-3775.2560 kDa heat shock protein, mitochondrial OS=Mus mu... [more]
CH60_HUMAN7.771e-3775.2560 kDa heat shock protein, mitochondrial OS=Homo s... [more]
CH60_CHICK7.771e-3775.2560 kDa heat shock protein, mitochondrial OS=Gallus... [more]
CH60_CRIGR1.731e-3674.2660 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH60_BOVIN1.731e-3674.2660 kDa heat shock protein, mitochondrial OS=Bos ta... [more]
CH60_DICDI3.857e-3668.5260 kDa heat shock protein, mitochondrial OS=Dictyo... [more]
CH60_CAEEL5.037e-3670.48Chaperonin homolog Hsp-60, mitochondrial OS=Caenor... [more]
CH60_TRYBB8.592e-3668.57Chaperonin HSP60, mitochondrial OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736244 ID=EY736244; Name=EY736244; organism=Citrus sinensis; type=EST; length=510bp
CACGCGTCCGCGGACGCGTGGGGTCGCCTCTCCTTCTATCTCTGCCACTA
GACTGTTACTCTCGGCTTCCTCTTCTCTGCAATTTTACGAAACTGCCACT
ATGTATCGTTTCGCTTCAAGCCTCGCTTCCAAAGCAAGGATCGCTAGGAA
CAGTACCCAGCAGATTGGAAATAGATTGAGTTGGTCCAGAAACTATGCTG
CCAAAGACATTAGATTTGGGGTTGAAGCTCGAGCTTTGATGCTGAAGGGT
GTTGAAGAGCTCGCCGATGCGGTCAAAGTCACCATGGGACCTAAGGGGCG
TAATGTGGTCATTGAACAAAGCTGGGGTGCTCCCAAGGTGACAAAAGATG
GTGTTACTGTTGCAAAGAGCATTGAATTCAAAGATAAAGTCAAGAACATT
GGTGCTAGCCTTGTGAAGCAAGTTGCTAATGCCACCAATGATGTTGCTGG
TGATGGAACTACCTGTGCAACAGTTCTTACCCGAGCAATATTTACAGAAG
GCTGCAAGTC
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