EY736244

Overview
NameEY736244
Unique NameEY736244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: HSP60_SCHPO (Heat shock protein 60, mitochondrial OS=Schizosaccharomyces pombe GN=hsp60 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 78/135 (57.78%), Postives = 103/135 (76.30%), Query Frame = 2
Query:  101 MYRFASSLASKARIARNSTQQIGNRLSWS--RNYAAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTE 499
            M  F SS  S+  + R + ++I  R +    R YA KD++FGV+ARA +L GV+ LA AV VT+GPKGRNV+I+Q +G+PK+TKDGVTVA+S+  KDK +N+GA LV+ VA+ TN+VAGDGTT ATVLTRAIF+E
Sbjct:    1 MVSFLSSSVSRLPL-RIAGRRIPGRFAVPQVRTYA-KDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSE 133          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 69/104 (66.35%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++F  +AR  MLKGV  LADAVKVT+GPKGRNVV+E+S+GAP++TKDGV+VAK IE +DK +N+GA +VK+VA+ TND AGDGTT ATVL ++I  EG K
Sbjct:    2 AAKDVKFDTDARNRMLKGVNTLADAVKVTLGPKGRNVVLEKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQSIVREGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SHISS (60 kDa chaperonin OS=Shigella sonnei (strain Ss046) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SHIFL (60 kDa chaperonin OS=Shigella flexneri GN=groL PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SHIF8 (60 kDa chaperonin OS=Shigella flexneri serotype 5b (strain 8401) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SHIDS (60 kDa chaperonin OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SHIBS (60 kDa chaperonin OS=Shigella boydii serotype 4 (strain Sb227) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_SHIB3 (60 kDa chaperonin OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_PECCP (60 kDa chaperonin OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
BLAST of EY736244 vs. ExPASy Swiss-Prot
Match: CH60_PECCC (60 kDa chaperonin (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  197 AAKDIRFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCK 508
            AAKD++FG +AR  ML+GV  LADAVKVT+GPKGRNVV+++S+GAP +TKDGV+VA+ IE +DK +N+GA +VK+VA+  ND AGDGTT ATVL +AI TEG K
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLK 105          
The following BLAST results are available for this feature:
BLAST of EY736244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP60_SCHPO1.792e-3357.78Heat shock protein 60, mitochondrial OS=Schizosacc... [more]
CH60_SILST1.792e-3366.3560 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH60_SHISS1.792e-3365.3860 kDa chaperonin OS=Shigella sonnei (strain Ss046... [more]
CH60_SHIFL1.792e-3365.3860 kDa chaperonin OS=Shigella flexneri GN=groL PE=... [more]
CH60_SHIF81.792e-3365.3860 kDa chaperonin OS=Shigella flexneri serotype 5b... [more]
CH60_SHIDS1.792e-3365.3860 kDa chaperonin OS=Shigella dysenteriae serotype... [more]
CH60_SHIBS1.792e-3365.3860 kDa chaperonin OS=Shigella boydii serotype 4 (s... [more]
CH60_SHIB31.792e-3365.3860 kDa chaperonin OS=Shigella boydii serotype 18 (... [more]
CH60_PECCP1.792e-3365.3860 kDa chaperonin OS=Pectobacterium carotovorum su... [more]
CH60_PECCC1.792e-3365.3860 kDa chaperonin (Fragment) OS=Pectobacterium car... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736244 ID=EY736244; Name=EY736244; organism=Citrus sinensis; type=EST; length=510bp
CACGCGTCCGCGGACGCGTGGGGTCGCCTCTCCTTCTATCTCTGCCACTA
GACTGTTACTCTCGGCTTCCTCTTCTCTGCAATTTTACGAAACTGCCACT
ATGTATCGTTTCGCTTCAAGCCTCGCTTCCAAAGCAAGGATCGCTAGGAA
CAGTACCCAGCAGATTGGAAATAGATTGAGTTGGTCCAGAAACTATGCTG
CCAAAGACATTAGATTTGGGGTTGAAGCTCGAGCTTTGATGCTGAAGGGT
GTTGAAGAGCTCGCCGATGCGGTCAAAGTCACCATGGGACCTAAGGGGCG
TAATGTGGTCATTGAACAAAGCTGGGGTGCTCCCAAGGTGACAAAAGATG
GTGTTACTGTTGCAAAGAGCATTGAATTCAAAGATAAAGTCAAGAACATT
GGTGCTAGCCTTGTGAAGCAAGTTGCTAATGCCACCAATGATGTTGCTGG
TGATGGAACTACCTGTGCAACAGTTCTTACCCGAGCAATATTTACAGAAG
GCTGCAAGTC
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