EY736163

Overview
NameEY736163
Unique NameEY736163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: AB2B_ARATH (ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 50/184 (27.17%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVL-KGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI-DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 581
            G++   D    Y S   +V+   + L+I  G+ + +VG +GSGKST+I +  R  EP                    R + G++ QEP LF  T+R NI       + EEI ++ +  +    +   P+  ++ V + G   S GQ+Q + + R ++K+  +L +DEAT+++D++++  +Q  +
Sbjct:  359 GHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEAL 542          

HSP 2 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 48/184 (26.09%), Postives = 91/184 (49.46%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVL-KGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQ-YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 581
            G ++L  +   Y S   +V+ +   L +  G+ + +VG++GSGKS++I +  R  +P+                   R   G++ QEP LF  T+  NI    +  S  E+ +S         + + P+   + V + G   S GQRQ + + R +LK+  +L +DEAT+++D +++  +Q+ +
Sbjct:  988 GTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQAL 1171          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPS (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB5) GN=ndvA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.482e-15
Identity = 51/186 (27.42%), Postives = 91/186 (48.92%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            G V+ +D+   Y    P + + ++ +   G+ I +VG TG+GKST I +  R  +P                    R   G++ QE +LF  ++  N+  +G+   +D E+  + ER Q  D +       D+   + G   S G+RQ L + R +LK   +L +DEAT+++D+ T+A++   + E
Sbjct:  343 GLVEFLDVSFSYDGKRPAI-EDLSFTALPGQTIALVGATGAGKSTAIALLHRAFDPQSGVVKIDGMDVRGLTMSGLRRNIGVVFQEALLFNRSIAENLR-VGKPDATDAELRLAAERAQALDFIDRNDLGFDTNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDE 526          

HSP 2 Score: 23.0978 bits (48), Expect = 3.482e-15
Identity = 12/36 (33.33%), Postives = 18/36 (50.00%), Query Frame = 1
Query:  604 TIISIAHRIPTVMDCDKAIVVDARWAKESGEPSQLL 711
            T   IAHR+ T+    + +V D     ESG   +L+
Sbjct:  532 TTFVIAHRLSTIRHATRILVFDNGKVIESGTFDELV 567          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_BORPE (Lipid A export ATP-binding/permease protein msbA OS=Bordetella pertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 47/184 (25.54%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   27 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            P  G V+   +  R+       +  ++  +  G+ + +VGR+GSGK+TL+ +  R V P                    RS   ++ Q+ VLF+ T+ +N+     G   D  +  +L    L + V   P  + + V  +    S GQRQ L + R ++K++ +L +DEAT+++D++++ ++Q
Sbjct:  377 PVRGKVEFRAVSHRFPDADRDTVSAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQ 560          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 47/184 (25.54%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   27 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            P  G V+   +  R+       +  ++  +  G+ + +VGR+GSGK+TL+ +  R V P                    RS   ++ Q+ VLF+ T+ +N+     G   D  +  +L    L + V   P  + + V  +    S GQRQ L + R ++K++ +L +DEAT+++D++++ ++Q
Sbjct:  377 PVRGKVEFRAVSHRFPDADRDTVSAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQ 560          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 47/184 (25.54%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   27 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            P  G V+   +  R+       +  ++  +  G+ + +VGR+GSGK+TL+ +  R V P                    RS   ++ Q+ VLF+ T+ +N+     G   D  +  +L    L + V   P  + + V  +    S GQRQ L + R ++K++ +L +DEAT+++D++++ ++Q
Sbjct:  377 PVRGKVEFRAVSHRFPDADRDTVSAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQ 560          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: ABCB6_RAT (ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 47/181 (25.97%), Postives = 94/181 (51.93%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYS--DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            G V+  ++   Y       L+ ++ ++  G+ + +VG +G+GKST++++ FR  + S                   RS  G++PQ+ VLF  T+ +NI   G+ +  D EI  + +   + D + + P+  ++ V + G   S G++Q + + R +LK   ++ +DEAT+++D+  +  IQ
Sbjct:  588 GRVEFENVHFSYADGRE-TLQDVSFTVMPGQTVALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQISLRSHIGVVPQDTVLFNDTIANNI-RYGRVTAGDSEIQAAAQAAGIHDAILSFPEGYETQVGERGLKLSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQ 766          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MESD_LEUME (Mesentericin-Y105 transport/processing ATP-binding protein mesD OS=Leuconostoc mesenteroides GN=mesD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.505e-15
Identity = 48/158 (30.38%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  102 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSN--IDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 569
            ++L+I  GEKI +VG +GSGKSTL+++     +P                    R     +PQEP +F G++  N  +      + E+I +++E  ++KD +        + +A+SG N S GQ+Q + L R +L  S +L +DE+T+++D  T+ +I
Sbjct:  508 VSLTITAGEKIALVGISGSGKSTLVKLLVNFFQPESGTISLGPTPLANLDKHELRGHINYLPQEPFIFSGSIMENLLLGAKPGTTQEDIIRAVEIAEIKDDIEKMSQGFGTELAESG-NISGGQKQRIALARAILVDSPVLILDESTSNLDVLTEKKI 664          

HSP 2 Score: 21.557 bits (44), Expect = 4.505e-15
Identity = 11/37 (29.73%), Postives = 18/37 (48.65%), Query Frame = 1
Query:  604 TIISIAHRIPTVMDCDKAIVVDARWAKESGEPSQLLE 714
            TII +AHR+      D+ + + +    E G    LL+
Sbjct:  675 TIIFVAHRLTISQRVDRILTMQSGKIIEDGTHDTLLK 711          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_YERPS (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pseudotuberculosis GN=msbA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15
Identity = 50/188 (26.60%), Postives = 91/188 (48.40%), Query Frame = 3
Query:   30 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            A G+++   +   Y       L  I + +  G+ + +VGR+GSGKST+  +  R  + S                   R++  ++ Q   LF  TV +NI      QYS  EI ++       D +      LD+++ ++G   S GQRQ + + R +L++  +L +DEAT+++D++++  IQ  + E
Sbjct:  338 AKGDIEFRHVTFYYPGKDTPALNDINIHLEAGKTVALVGRSGSGKSTIANLLTRFYDVSEGSILLDGHDLRDYRLGALRNQVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGENGIMLSGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDE 525          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_YERPN (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msbA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15
Identity = 50/188 (26.60%), Postives = 91/188 (48.40%), Query Frame = 3
Query:   30 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            A G+++   +   Y       L  I + +  G+ + +VGR+GSGKST+  +  R  + S                   R++  ++ Q   LF  TV +NI      QYS  EI ++       D +      LD+++ ++G   S GQRQ + + R +L++  +L +DEAT+++D++++  IQ  + E
Sbjct:  338 AKGDIEFRHVTFYYPGKDTPALNDINIHLEAGKTVALVGRSGSGKSTIANLLTRFYDVSEGSILLDGHDLRDYRLGALRNQVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGENGIMLSGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDE 525          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_YERPE (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis GN=msbA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15
Identity = 50/188 (26.60%), Postives = 91/188 (48.40%), Query Frame = 3
Query:   30 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            A G+++   +   Y       L  I + +  G+ + +VGR+GSGKST+  +  R  + S                   R++  ++ Q   LF  TV +NI      QYS  EI ++       D +      LD+++ ++G   S GQRQ + + R +L++  +L +DEAT+++D++++  IQ  + E
Sbjct:  338 AKGDIEFRHVTFYYPGKDTPALNDINIHLEAGKTVALVGRSGSGKSTIANLLTRFYDVSEGSILLDGHDLRDYRLGALRNQVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGENGIMLSGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDE 525          
The following BLAST results are available for this feature:
BLAST of EY736163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 452
Match NameE-valueIdentityDescription
AB2B_ARATH2.782e-1527.17ABC transporter B family member 2 OS=Arabidopsis t... [more]
NDVA_RHOPS3.482e-1527.42Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_BORPE3.633e-1525.54Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORPA3.633e-1525.54Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORBR3.633e-1525.54Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB6_RAT3.633e-1525.97ATP-binding cassette sub-family B member 6, mitoch... [more]
MESD_LEUME4.505e-1530.38Mesentericin-Y105 transport/processing ATP-binding... [more]
MSBA_YERPS4.745e-1526.60Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPN4.745e-1526.60Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPE4.745e-1526.60Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736163 ID=EY736163; Name=EY736163; organism=Citrus sinensis; type=EST; length=874bp
CACGCGTCCGTCCACCTCCAAATTGGCCTGCTCATGGCAATGTGGACCTC
ATAGACTTGCAGGTCAGATATCGCTCCAACACTCCTCTGGTTCTCAAAGG
TATTACACTCAGCATTCACGGGGGAGAGAAGATTGGTGTAGTTGGGCGTA
CAGGAAGTGGGAAGTCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAG
CCTTCAGGAGGGAGAATCATTATTGATGGAATCGACATTTCATTGTTGGG
GCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAGAACCTGTCC
TTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGTCAGTATTCA
GATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAAAGATGTGGT
AGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATAGTGGTGACA
ACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGGGTTATGCTA
AAGCACAGCCGGCTCTTGTTTATGGATGAGGCGACGGCTTCTGTTGATTC
ACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGGAGTCTGCTGCC
TGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATGGATTGTGA
TAAAGCTATAGTCGTTGATGCACGATGGGCGAAAGAATCTGGCGAGCCAT
CCCAGTTGCTTGAAAAGCCATCACTCTCCGCAGCATCGGTGGAAGAATTA
CCCAACCACACCATCAAACTGGACGAACGTATCCCTTGGACTCGATCGCG
GGTCGAACCGACGTTCCGGTGAAGGAAGCCCGTTATATATACAAGTTAGT
GTTCTGTCGCTGGCACAATCCCTT
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