EY736163

Overview
NameEY736163
Unique NameEY736163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_YERPA (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msbA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15
Identity = 50/188 (26.60%), Postives = 91/188 (48.40%), Query Frame = 3
Query:   30 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            A G+++   +   Y       L  I + +  G+ + +VGR+GSGKST+  +  R  + S                   R++  ++ Q   LF  TV +NI      QYS  EI ++       D +      LD+++ ++G   S GQRQ + + R +L++  +L +DEAT+++D++++  IQ  + E
Sbjct:  338 AKGDIEFRHVTFYYPGKDTPALNDINIHLEAGKTVALVGRSGSGKSTIANLLTRFYDVSEGSILLDGHDLRDYRLGALRNQVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGENGIMLSGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDE 525          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: NDVA_RHILO (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium loti GN=ndvA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.882e-15
Identity = 49/186 (26.34%), Postives = 92/186 (49.46%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQY--SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            G+V   D+   + +N+   + G++  +  G+ + +VG TG+GK+TLI +  R+  PS                   R     + Q+  L   ++  NI  +G+   S+ EI  +      +D + AK    D++V + G   S G+RQ + + R +LK + +L +DEAT+++D +T+  ++  I E
Sbjct:  333 GHVRFEDVGFEF-ANSGQGVSGVSFEVQAGQTVAIVGPTGAGKTTLINLLQRVFSPSTGRILIDGIDTRTVTRKSLRHSIATVFQDAGLLNRSIEDNIR-VGRADASNVEIHAAAVAAAAQDFILAKSGGYDTVVGERGGQLSGGERQRIAIARAVLKDAPILVLDEATSALDVETEDRVKEAIDE 516          

HSP 2 Score: 25.409 bits (54), Expect = 5.882e-15
Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 1
Query:  604 TIISIAHRIPTVMDCDKAIVVDARWAKESGEPSQL 708
            T   IAHR+ TV D D  + +D     E G  ++L
Sbjct:  522 TTFIIAHRLTTVRDADLVVFMDKGRVVEMGGFAEL 556          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: TAP1_GORGO (Antigen peptide transporter 1 OS=Gorilla gorilla gorilla GN=TAP1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.197e-15
Identity = 56/202 (27.72%), Postives = 100/202 (49.50%), Query Frame = 3
Query:    9 RPPPNW---PAH--GNVDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            R PP+    P H  G V   D+   Y  N P  LVL+G+T ++H GE   +VG  GSGKST+  +   L +P+                     +   + QEP +F  +++ NI      + + EEI  +  +C     ++  P   D+ V ++G   S GQRQ + L R +++   +L +D+AT+++D+ +  ++++++ E
Sbjct:  487 RCPPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLHPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKCGAHSFISGLPQGYDTEVGEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 687          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_XANOR (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae GN=msbA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 3
Query:   30 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQL----KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            A G ++  D+  RY       L  ++     G    +VGR+GSGKS+LI++  R  +                     R +  ++ Q+ +LF+G++  N+   G+    +    LER  L     + VA  P+ L S V   G   S GQRQ L + R MLK + +L +DEATA++D++++  +Q
Sbjct:  342 AKGLIEFRDVTARYPGQVNPALADVSFIAQPGTVTAIVGRSGSGKSSLIKLIPRFYDAEAGQILLDGQPVQAYALADLRRQIALVGQQVMLFDGSIAENV-AFGEMRSADA-SQLERAILGANAMEFVAQLPEGLQSHVGAKGGRLSGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQ 524          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_XANOM (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msbA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 3
Query:   30 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQL----KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            A G ++  D+  RY       L  ++     G    +VGR+GSGKS+LI++  R  +                     R +  ++ Q+ +LF+G++  N+   G+    +    LER  L     + VA  P+ L S V   G   S GQRQ L + R MLK + +L +DEATA++D++++  +Q
Sbjct:  342 AKGLIEFRDVTARYPGQVNPALADVSFIAQPGTVTAIVGRSGSGKSSLIKLIPRFYDAEAGQILLDGQPVQAYALADLRRQIALVGQQVMLFDGSIAENV-AFGEMRSADA-SQLERAILGANAMEFVAQLPEGLQSHVGAKGGRLSGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQ 524          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_ACIAD (Lipid A export ATP-binding/permease protein msbA OS=Acinetobacter sp. (strain ADP1) GN=msbA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 48/170 (28.24%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   93 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQY---SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREGV 593
            +K   L+I  GE + +VGR+G+GK++L+ +  R  E +                   R +  ++ Q+ VLF  +VR NI   GQ    ++ +I  + +     D +   P   D+++   G N S GQRQ + + R +LK++ +L +DEAT+++D++++  IQ+   E +
Sbjct:  351 IKDFNLTIEPGETVAIVGRSGAGKTSLVNLLVRFQEVTSGSLYLDHIPIQDIELSCLRQQVAMVNQQVVLFNRSVRENI-AYGQLEGAAEADIVAAAKAAYAHDFIMNLPQGYDTILGAQGLNLSGGQRQRIAIARAILKNAPILILDEATSALDNESEHFIQKAFDEAM 519          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MDL1_YEAST (ATP-dependent permease MDL1, mitochondrial OS=Saccharomyces cerevisiae GN=MDL1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 54/191 (28.27%), Postives = 87/191 (45.55%), Query Frame = 3
Query:   90 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI----DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD----AEIQRIIREGVCCLYNYQHCSQDTHS 638
            + K + ++I  GE +  VG +GSGKST+  +  R  + +                   R   G + QEP+LF GT+  NI     P     D+ I +++ +      +A  PD L ++V   G   S GQ+Q + L R  L    +L +DEAT+++DSQ++      +QR +  G   +      S   HS
Sbjct:  449 IFKDLNITIKPGEHVCAVGPSGSGKSTIASLLLRYYDVNSGSIEFGDEDIRNFNLRKYRRLIGYVQQEPLLFNGTILDNILYCIPPEIAEQDDRIRRAIGKANCTKFLANFPDGLQTMVGARGAQLSGGQKQRIALARAFLLDPAVLILDEATSALDSQSEEIVAKNLQRRVERGFTTISIAHRLSTIKHS 639          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: ABCB6_MOUSE (ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 43/162 (26.54%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   93 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYS--DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            L+ ++ ++  G+ + +VG +G+GKST++++ FR  + S                   RS  G++PQ+ VLF  T+ +NI   G+ +  D E+  + +   + D + + P+  ++ V + G   S G++Q + + R +LK   ++ +DEAT+++D+  +  IQ
Sbjct:  606 LQDVSFTVMPGQTVALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQISLRSHIGVVPQDTVLFNDTIANNI-RYGRVTAGDSEVEAAAQAAGIHDAILSFPEGYETQVGERGLKLSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQ 766          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: Y664_HAEIN (Probable ABC transporter ATP-binding protein HI0664 OS=Haemophilus influenzae GN=HI0664 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.946e-15
Identity = 47/179 (26.26%), Postives = 90/179 (50.28%), Query Frame = 3
Query:   39 NVDLIDLQ-VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD-EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 569
            +V  ID++ V +      +L  ++LS+  GE +G+ GR+GSGKSTL+++  R  +P                    R     I Q+  +F  T+  NI    + +  EEI ++ ++  + D + + P    + + + G N S G++Q + + R  L ++ ++ +DE T+++DS  +A I
Sbjct:  336 DVSRIDVENVNFAYGEEQILSDVSLSVKKGEILGIHGRSGSGKSTLLKLLMRFYDPKSGSIKINGETLPNINTCSLRDNMAYITQQTYIFNETIEENIRLARRDATLEEIMEAAKKASIHDFILSLPQGYQTKMTELGGNLSDGEKQRIGIARAFLHNAPIILLDEPTSNLDSLNEAMI 514          

HSP 2 Score: 21.1718 bits (43), Expect = 9.946e-15
Identity = 8/21 (38.10%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  607 IISIAHRIPTVMDCDKAIVVD 669
            II ++HR  T+  CD+ I ++
Sbjct:  527 IILVSHRQSTMAICDQVIGIE 547          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: AB17I_ARATH (ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.057e-14
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 3
Query:   90 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI----DPIGQ-YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 581
            +LKG+T+ I  G  +GV+G +GSGKST ++   RL EP                    R R G++ Q PVLF+GTV  N+    +  G+  SDEE++K L    L    A K          +G   SVGQ Q + L R +     +L +DE T+++D  +   I+ +I
Sbjct:   44 ILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKK----------TGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVI 202          
The following BLAST results are available for this feature:
BLAST of EY736163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 452
Match NameE-valueIdentityDescription
MSBA_YERPA4.745e-1526.60Lipid A export ATP-binding/permease protein msbA O... [more]
NDVA_RHILO5.882e-1526.34Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
TAP1_GORGO6.197e-1527.72Antigen peptide transporter 1 OS=Gorilla gorilla g... [more]
MSBA_XANOR8.093e-1529.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANOM8.093e-1529.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ACIAD8.093e-1528.24Lipid A export ATP-binding/permease protein msbA O... [more]
MDL1_YEAST8.093e-1528.27ATP-dependent permease MDL1, mitochondrial OS=Sacc... [more]
ABCB6_MOUSE8.093e-1526.54ATP-binding cassette sub-family B member 6, mitoch... [more]
Y664_HAEIN9.946e-1526.26Probable ABC transporter ATP-binding protein HI066... [more]
AB17I_ARATH1.057e-1433.14ABC transporter I family member 17 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736163 ID=EY736163; Name=EY736163; organism=Citrus sinensis; type=EST; length=874bp
CACGCGTCCGTCCACCTCCAAATTGGCCTGCTCATGGCAATGTGGACCTC
ATAGACTTGCAGGTCAGATATCGCTCCAACACTCCTCTGGTTCTCAAAGG
TATTACACTCAGCATTCACGGGGGAGAGAAGATTGGTGTAGTTGGGCGTA
CAGGAAGTGGGAAGTCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAG
CCTTCAGGAGGGAGAATCATTATTGATGGAATCGACATTTCATTGTTGGG
GCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAGAACCTGTCC
TTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGTCAGTATTCA
GATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAAAGATGTGGT
AGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATAGTGGTGACA
ACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGGGTTATGCTA
AAGCACAGCCGGCTCTTGTTTATGGATGAGGCGACGGCTTCTGTTGATTC
ACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGGAGTCTGCTGCC
TGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATGGATTGTGA
TAAAGCTATAGTCGTTGATGCACGATGGGCGAAAGAATCTGGCGAGCCAT
CCCAGTTGCTTGAAAAGCCATCACTCTCCGCAGCATCGGTGGAAGAATTA
CCCAACCACACCATCAAACTGGACGAACGTATCCCTTGGACTCGATCGCG
GGTCGAACCGACGTTCCGGTGAAGGAAGCCCGTTATATATACAAGTTAGT
GTTCTGTCGCTGGCACAATCCCTT
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