EY736163

Overview
NameEY736163
Unique NameEY736163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: COMA_STRPN (Transport/processing ATP-binding protein comA OS=Streptococcus pneumoniae GN=comA PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 3
Query:   90 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQY---SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 569
            VL  I L++  G K+  VG +GSGK+TL ++     +PS                   R     + Q+P +F GT+  N+  +G     + E+I +++E  ++++ +   P    + +   G   S GQRQ + L R +L  + +L +DEAT+S+D  T+  I
Sbjct:  499 VLSDINLTVPQGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGSVNLNQIDKKALRQYINYLSQQPYVFNGTILENL-LLGAKEGTTQEDILRAVELAEIREDIERMPLNYQTELTSDGAGISGGQRQRIALARALLTDAPVLILDEATSSLDILTEKRI 660          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.093e-12
Identity = 41/184 (22.28%), Postives = 84/184 (45.65%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPL-VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID-PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 581
            G VD  ++   YR+     VL+ ++ S+  G+   +VG +GSGKS+ + +                                ++ QEPVLF  ++  NI   +     E + ++ ++      +    D   +   + G   S GQ+Q + + R ++++  +L +DEAT+++D++++  IQ+ I
Sbjct:  498 GRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGGRVLLDGKPIGAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAI 681          

HSP 2 Score: 32.3426 bits (72), Expect = 1.093e-12
Identity = 21/69 (30.43%), Postives = 33/69 (47.83%), Query Frame = 1
Query:  604 TIISIAHRIPTVMDCDKAIVVDARWAKESGEPSQLLEKPSLSAASVEELPNHTIKLDERIPWTRSRVEP 810
            T++ IAHR+ TV      +V+D     + G   QLL +  L A  V+      + L+  + +T S  EP
Sbjct:  689 TVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQ---RQMLGLEHPLDYTASHKEP 754          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: TAP1_HUMAN (Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 54/202 (26.73%), Postives = 98/202 (48.51%), Query Frame = 3
Query:    9 RPPPNW---PAH--GNVDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            R PP+    P H  G V   D+   Y  N P  LVL+G+T ++  GE   +VG  GSGKST+  +   L +P+                     +   + QEP +F  +++ NI      + + EEI  +  +      ++  P   D+ V ++G   S GQRQ + L R +++   +L +D+AT+++D+ +  ++++++ E
Sbjct:  547 RCPPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 747          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: PHNC1_RHOPB (Phosphonates import ATP-binding protein phnC 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=phnC1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 60/196 (30.61%), Postives = 94/196 (47.96%), Query Frame = 3
Query:   78 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS---XXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG-TVRSNI------------DPIGQYSDEEIWKS---LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREGVCCLYN 608
            N    L+G++LS+  GE IG++G +G+GKSTLI+   RL+EPS                      R R G+I QE  L E  TV  N+                ++++++I ++   LER  L D +  + D L           S GQRQ + + R +++   LL +DE TAS+D +T   + R++ E   C+ N
Sbjct:   13 NGEAALRGVSLSVGAGEIIGLIGPSGAGKSTLIRCVNRLIEPSSGRVQLGEVELTGLSSGALRRERRRIGMIFQEYALIERLTVMENVLAGRLGYTGFWNSWFRRFAEQDIQRAIALLERVGLIDHIDKRADAL-----------SGGQRQRVGIARALIQQPELLLVDEPTASLDPKTSRSVMRLLTE--LCIEN 195          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_BLOFL (Lipid A export ATP-binding/permease protein msbA OS=Blochmannia floridanus GN=msbA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 47/171 (27.49%), Postives = 85/171 (49.71%), Query Frame = 3
Query:   75 SNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 581
            +NTP  L  I  +I  G+ I +VGR+GSGKST++ +  R  +                     R +  ++ Q   LF  T+ +NI       YS   I ++ +       ++   +  D++V ++G   S GQRQ + + R +L++  +L +DEAT+S+D++++  I + I
Sbjct:  356 TNTPS-LCNINFNIESGKTIALVGRSGSGKSTIVNLLTRFYDVYQGRILLDGLNLNDYTLTSLREQVSVVTQNVYLFNDTIANNIAYARTRFYSRASIEEAAKMAYAMGFISKMKNGFDTIVGENGILLSNGQRQRIAIARALLRNCPILILDEATSSLDTESECIIYKSI 525          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: PHNC2_SYNJB (Phosphonates import ATP-binding protein phnC 2 OS=Synechococcus sp. GN=phnC2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 59/186 (31.72%), Postives = 88/186 (47.31%), Query Frame = 3
Query:   87 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP---SXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG-TVRSNI---------------DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 587
            + LKG+TL +  G+ + ++G +G+GKSTL++   RLVEP   S                   R + G+I QE  L E  TV  N+                   Q + +E ++ L+R  L D     PDK         D  S GQRQ + + R +L++  LL +DE TAS+D +T  +I R+I E
Sbjct:   16 MALKGVTLEVPDGQVMALIGPSGAGKSTLLRCINRLVEPTSGSIWLNGIDLTRLNTRELRQARRKIGMIFQEYALVERLTVMENVLSGQLGYVNFWQSWFRKFPQATIDEAFRLLDRVGLSDF----PDK-------RADALSGGQRQRVGIARALLQNPELLLVDEPTASLDPKTSRQIMRLINE 190          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: NDVA_RHIME (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium meliloti GN=ndvA PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 46/184 (25.00%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQY--SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 581
            G V+  D+   + +N+   ++ ++     G+ I +VG TG+GK+TL+ +  R+ EP                    R     + Q+  L   ++  NI  +G+   S +E+  + E     D +  + +  D++V + G+  S G+RQ + + R +LK++ +L +DEAT+++D +T+A ++  I
Sbjct:  333 GEVEFRDISFDF-ANSAQGVRNVSFKAKAGQTIAIVGPTGAGKTTLVNLLQRVHEPKHGQILIDGVDIATVTRKSLRRSIATVFQDAGLMNRSIGENIR-LGREDASLDEVMAAAEAAAASDFIEDRLNGYDTVVGERGNRLSGGERQRVAIARAILKNAPILVLDEATSALDVETEARVKDAI 514          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA_PSEU2 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msbA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 52/185 (28.11%), Postives = 85/185 (45.95%), Query Frame = 3
Query:   36 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD------EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            G++++ +L   Y      VL  I+ S   G+ I +VGR+GSGKSTL  +  R                        R     + Q   LF  T+ +NI     Y D       +I  +      ++ +   P   D+ V ++G   S GQRQ L + R +LK++ LL +DEAT+++D++++  IQ
Sbjct:  351 GHLEVKNLSFFYPQTARQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHDIGNILLDGVEINDYRLRNLRRHIAQVNQNVTLFNDTIANNI----AYGDLAGAPRADIEAAAADAYAREFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQ 531          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: MSBA1_COLP3 (Lipid A export ATP-binding/permease protein msbA 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 45/166 (27.11%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   78 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID-PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            +T L L  IT  +  GE + +VGR+GSGKST   +  R  + +                   R +F  + Q+ VLF  T+ +NI     + ++ EI ++ +   + +        L++ + ++G   S GQRQ + + R +L  +  L +DEAT+++D++++  IQ
Sbjct:  376 DTKLALNDITFDLAPGETLALVGRSGSGKSTASSLLLRFYDATRGEILIDDTNIEQFQLKDLRKQFSYVSQQVVLFNDTLANNIAYGKPEATEAEIIEAAKSAHVMEFAEHMEQGLETNIGENGALLSGGQRQRVAIARALLCDTPFLILDEATSALDTESERHIQ 541          
BLAST of EY736163 vs. ExPASy Swiss-Prot
Match: ABCB8_XENTR (ATP-binding cassette sub-family B member 8, mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 45/164 (27.44%), Postives = 85/164 (51.83%), Query Frame = 3
Query:   90 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR-FGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 572
            VL+   L I  G+ + +VG++G GKST+  +  R  +P+                   R    G I QEPVLF  T+  NI   G+   +D E+ ++  +      + + P+  ++++ + G   S GQ+Q + + R +LK  ++L +DEAT+++D++++  +Q
Sbjct:  459 VLRSFDLRIPHGKTVALVGQSGGGKSTVAALLERFYDPTEGAVQLDGVDIRILDPSWLRGEVIGFINQEPVLFGTTIIENIR-FGRPDATDAEVHEAAIQANADSFIRSFPEGYNTMLGERGVTLSGGQKQRVAIARALLKDPKILILDEATSALDTESERAVQ 621          
The following BLAST results are available for this feature:
BLAST of EY736163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 452
Match NameE-valueIdentityDescription
COMA_STRPN7.575e-1328.22Transport/processing ATP-binding protein comA OS=S... [more]
ABCB9_MOUSE1.093e-1222.28ATP-binding cassette sub-family B member 9 OS=Mus ... [more]
TAP1_HUMAN1.292e-1226.73Antigen peptide transporter 1 OS=Homo sapiens GN=T... [more]
PHNC1_RHOPB1.292e-1230.61Phosphonates import ATP-binding protein phnC 1 OS=... [more]
MSBA_BLOFL1.292e-1227.49Lipid A export ATP-binding/permease protein msbA O... [more]
PHNC2_SYNJB1.688e-1231.72Phosphonates import ATP-binding protein phnC 2 OS=... [more]
NDVA_RHIME1.688e-1225.00Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_PSEU21.688e-1228.11Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA1_COLP31.688e-1227.11Lipid A export ATP-binding/permease protein msbA 1... [more]
ABCB8_XENTR1.688e-1227.44ATP-binding cassette sub-family B member 8, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736163 ID=EY736163; Name=EY736163; organism=Citrus sinensis; type=EST; length=874bp
CACGCGTCCGTCCACCTCCAAATTGGCCTGCTCATGGCAATGTGGACCTC
ATAGACTTGCAGGTCAGATATCGCTCCAACACTCCTCTGGTTCTCAAAGG
TATTACACTCAGCATTCACGGGGGAGAGAAGATTGGTGTAGTTGGGCGTA
CAGGAAGTGGGAAGTCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAG
CCTTCAGGAGGGAGAATCATTATTGATGGAATCGACATTTCATTGTTGGG
GCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAGAACCTGTCC
TTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGTCAGTATTCA
GATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAAAGATGTGGT
AGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATAGTGGTGACA
ACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGGGTTATGCTA
AAGCACAGCCGGCTCTTGTTTATGGATGAGGCGACGGCTTCTGTTGATTC
ACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGGAGTCTGCTGCC
TGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATGGATTGTGA
TAAAGCTATAGTCGTTGATGCACGATGGGCGAAAGAATCTGGCGAGCCAT
CCCAGTTGCTTGAAAAGCCATCACTCTCCGCAGCATCGGTGGAAGAATTA
CCCAACCACACCATCAAACTGGACGAACGTATCCCTTGGACTCGATCGCG
GGTCGAACCGACGTTCCGGTGAAGGAAGCCCGTTATATATACAAGTTAGT
GTTCTGTCGCTGGCACAATCCCTT
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