EY736156

Overview
NameEY736156
Unique NameEY736156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3495 contig Csv1_Contig3495:641..1487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_METMA (Methionyl-tRNA synthetase OS=Methanosarcina mazei GN=metG PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  136 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            A+LDIRVGK+  V+    +  L   E+D+GE +PR +V+G+  +   EE+  + V VL NLKP  + G++S+ M+L A+      V  + P K  K G R+
Sbjct:  615 AKLDIRVGKVLLVEPVKKSKKLLRIEVDIGEEKPRQLVAGMASYYTPEELVGKSVIVLANLKPAKLCGVESNGMML-AADDGGAIVAALMPDKEIKSGSRI 714          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_METAC (Methionyl-tRNA synthetase OS=Methanosarcina acetivorans GN=metG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.764e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  136 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            A+LDIRVGK+  V+    +  L   E+D+GE +PR +V+G+  +   EE+  + V VL NLKP  + G++S+ M+L A+      V  + P K  K G R+
Sbjct:  612 AKLDIRVGKVLFVEPVKKSRKLLRVEVDIGEEKPRQLVAGMASYYTSEELVGKYVVVLANLKPAKLCGVESNGMML-AADDGGAIVAALMPDKEIKPGSRI 711          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYMC_DICDI (Probable methionyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=metS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.764e-11
Identity = 43/163 (26.38%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  142 LDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVEL----VEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 618
            +D+++  + +V  HP A+ LYV ++ +G  Q +T VSG+  +    ++  + + V+ NLKP   +G+ S AM+L A     TK  L       P+S + G ++A  G   +P   ++ +K   E +  DL    ++++  K   F           I +G +R
Sbjct:  577 IDMKIATVLEVNDHPSAENLYVIKLSLGGDQTKTAVSGIKANFEKSQLIGKKLAVVLNLKPSKFKGVLSEAMILVADDGQATKESLSFLVPSNPQSIEAGSKIAGKGMSIKPKPTIDYQK---EFLHYDLTCIDKIISYNKSQLFINQNEPLVSEKIGNGKVR 736          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_FLAJ1 (Methionyl-tRNA synthetase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=metG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  136 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            A++DIR+G I + +K P A+ L V ++D G +  RT+VSG+ +    EE+  + V VL NL P A+RG++S  M+L  + ++  K+  V P   A  G  V
Sbjct:  612 AKMDIRIGTILEAEKMPKANKLLVLKVDTG-IDVRTIVSGIAESFSPEEIIGKRVSVLANLAPRALRGVESQGMILMTTNAEG-KLVFVNPDADAPNGATV 710          
The following BLAST results are available for this feature:
BLAST of EY736156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SYM_METMA5.179e-1137.62Methionyl-tRNA synthetase OS=Methanosarcina mazei ... [more]
SYM_METAC6.764e-1137.62Methionyl-tRNA synthetase OS=Methanosarcina acetiv... [more]
SYMC_DICDI6.764e-1126.38Probable methionyl-tRNA synthetase, cytoplasmic OS... [more]
SYM_FLAJ18.834e-1137.62Methionyl-tRNA synthetase OS=Flavobacterium johnso... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-F05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736156 ID=EY736156; Name=EY736156; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGAAATGTAAGCGTTTTTTATAGAATCTTATTGTCTGTAGT
AGATGGTGGTGGAAAGAAACAAAAGTCAGCAAAATCTACAGCTGGAGCCA
AATCAAAAACCACTGCTGAACCAGAAATTTCGATTGCAAGACTTGATATC
CGTGTTGGAAAAATTACAAAAGTTCAAAAACATCCTGATGCCGATGCACT
GTATGTAGAAGAAATTGATGTGGGTGAAGTACAGCCTCGAACAGTAGTTA
GTGGCCTTGTCAAGCATATACCTCTTGAAGAGATGCAGGAGAGAATGGTC
TGTGTTCTTTGCAATCTGAAACCAGTAGCAATGAGGGGAATCAAATCACA
TGCAATGGTTCTTTGTGCTTCAACCAGTGATAACACCAAGGTTGAATTGG
TTGAGCCACCAAAATCTGCAAAAATTGGAGAAAGAGTTGCATTTCCTGGG
TTTGAAGGCGAGCCTGATGATGTGTTAAACCCTAAGAAGAAGGTTTGGGA
GACAGTGCAAGTGGATTTACACACTAACACCGAGCTGGTGGCCTGCTATA
AAGATATTCCTTTCACGACATCAGCTGGTATTTGCACTGTTTCCTCCATT
CAAAGTGGGTCTATACGGTAGCTCGACTTCTTCAATCATTGGAAAGCGAG
AATTCCTAATCTTCTGATTGTGTNAACTTTGCTTTTTTATCCTAATGACT
TTTCTCGTTGTGTGAAATGGTGTATGTGGACCAAATTTTGGTGTCAGAAT
AGACTAGATTATGTCGTGGCCTCATTAGTGTGACCTTTCCCCCCCATTAG
AAGAAAACCATTGGCTCGAACCATGGACCAGTTGAATCACGATCTTAT
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