EY736146

Overview
NameEY736146
Unique NameEY736146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.042e-32
Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 3 
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY                         +Y    GTMFWALFVLGHDCGHGSFS+   LNS+VGH++HSS+L PY
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPY 129

HSP 2 Score: 29.6462 bits (65), Expect = 2.042e-32
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1 
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GH+E DE+W P++EK
Sbjct:  141 QNHGHIEKDESWVPLTEK 158
The following BLAST results are available for this feature:
BLAST of EY736146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3E_SOYBN2.042e-3256.19Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-E04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736146 ID=EY736146; Name=EY736146; organism=Citrus sinensis; type=EST; length=832bp
CACGCGTCCGCTATCTTCTGTCTCTCTTAACCCTTTGAGGATTTTTCTGA
GACCCAATGGCGAGTTGGGTTCTTTCAGAATGTGGCTTAAAGCCTCTGCC
TCATATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAGGCCAGGT
TTTTGCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAA
TGTTCGGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGC
TCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGAATCA
ACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGA
TCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAG
AGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCTATGA
GCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCT
GCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCANGG
AACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAA
GCTTTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGGTGCAT
TCTTCAATGCTGGGTCCTTATCATGGATGGAGAATCAGGCACGGGACTCA
TCGTCGAAGGCGATGGGCATGTTGAAAATGATGAAGCCTGGGCACCGGTG
TCTGAGAAAGATGAAGGGAGTTGGATAGTGGAACAGGATTTGGGACATTC
GAAATCCCTTGTCCTGGGGTTGAGTGCCGCTT
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