EY736111

Overview
NameEY736111
Unique NameEY736111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.341e-56
Identity = 99/139 (71.22%), Postives = 120/139 (86.33%), Query Frame = 3
Query:   39 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            S++VAT +R + AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++  L KE+ YLLR  W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 142          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.699e-56
Identity = 100/139 (71.94%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   39 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 142          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.629e-56
Identity = 83/127 (65.35%), Postives = 107/127 (84.25%), Query Frame = 3
Query:   75 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            + A+ VAPF GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEV 132          

HSP 2 Score: 51.9878 bits (123), Expect = 7.629e-56
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            EV KEYP ++VRIIG  + RQVQC+SF+A KPPG
Sbjct:  134 EVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.828e-55
Identity = 99/139 (71.22%), Postives = 120/139 (86.33%), Query Frame = 3
Query:   39 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 142          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.744e-55
Identity = 84/127 (66.14%), Postives = 105/127 (82.68%), Query Frame = 3
Query:   75 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            + A+ VAPF GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV
Sbjct:    8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133          

HSP 2 Score: 50.447 bits (119), Expect = 3.744e-55
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            EV KEYP ++VR+IG  + RQVQC+SF+A +PPG
Sbjct:  135 EVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 8.299e-55
Identity = 83/127 (65.35%), Postives = 106/127 (83.46%), Query Frame = 3
Query:   75 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 132          

HSP 2 Score: 50.0618 bits (118), Expect = 8.299e-55
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            EV KEYP ++VR+IG  + RQVQC+SF+A +PPG
Sbjct:  134 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.075e-54
Identity = 102/145 (70.34%), Postives = 122/145 (84.14%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 452
            MASS    ++VATA RA+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKE 144          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54
Identity = 101/145 (69.66%), Postives = 121/145 (83.45%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 452
            MASS    ++VATA   + AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKE 144          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53
Identity = 101/145 (69.66%), Postives = 121/145 (83.45%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 452
            MASS    ++VATA  A+ AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCT A QV+KE
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKE 144          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.027e-53
Identity = 100/145 (68.97%), Postives = 121/145 (83.45%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 452
            MA+S    ++VATA  A+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKE 144          
The following BLAST results are available for this feature:
BLAST of EY736111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS_HELAN3.341e-5671.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_FLAPR5.699e-5671.94Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_HORVU7.629e-5665.35Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FLAPR2.828e-5571.22Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_WHEAT3.744e-5566.14Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT8.299e-5565.35Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS3_FRIAG1.075e-5470.34Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG6.967e-5469.66Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_FRIAG1.188e-5369.66Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FRIAG2.027e-5368.97Ribulose bisphosphate carboxylase small chain 1/4,... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736111 ID=EY736111; Name=EY736111; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTT
GCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTT
CACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACA
ATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAG
GTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCC
GCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCT
CCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTNGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTAT
CGGATNNTGACACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCA
AGCCACCAGGCGTCTAGGTTCCCAATTAAATGTGTGTAACCACCCATGCA
AAATTGTTGATTATTATTATGGTGTAACCCCCATAATGATCATTCGATCA
NTGGGGGGGTTCGGGTTGGCGTTTAATTTGGACTTAGGCCGGTTGTTGCT
GCTGCTCAGACCTTTTGTGGGTCTCTCCCCGAATTTTGGCTTTTTTTTTA
TATATATTTTAATAAATGGAATCCTTTGTTCCCAGCTCCATCAATCTGGG
TCCCGGATGTTCAGTTAAGGAGGTTAGAGTGTCTGGAATTTAGAAAACAA
AAAAAGGGGGGCCGCTCTTCAAGGATCCATCCTCGCTCT
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