EY736111

Overview
NameEY736111
Unique NameEY736111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.592e-24
Identity = 55/131 (41.98%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  105 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+       P
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 143

HSP 2 Score: 27.7202 bits (60), Expect = 6.592e-24
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.573e-24
Identity = 57/145 (39.31%), Postives = 76/145 (52.41%), Query Frame = 3 
Query:   66 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            A++   ++V    G   SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+       P
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 145

HSP 2 Score: 27.7202 bits (60), Expect = 8.573e-24
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  142 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 171
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 66/154 (42.86%), Postives = 80/154 (51.95%), Query Frame = 3 
Query:   36 SSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+       P
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFP 146
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.460e-23
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 3 
Query:  195 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+       P
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFP 143

HSP 2 Score: 27.7202 bits (60), Expect = 2.460e-23
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 65/154 (42.21%), Postives = 80/154 (51.95%), Query Frame = 3 
Query:   36 SSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPL+DE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+       P
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFP 146
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.421e-23
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 3 
Query:  195 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+       P
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFP 143

HSP 2 Score: 27.7202 bits (60), Expect = 5.421e-23
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.054e-23
Identity = 52/126 (41.27%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:  120 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+       P
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFP 143

HSP 2 Score: 26.1794 bits (56), Expect = 7.054e-23
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1 
Query:  475 YPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            +P +++R++     RQVQ   FL  +PP
Sbjct:  142 FPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.179e-23
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 3 
Query:  195 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+       P
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 143

HSP 2 Score: 27.7202 bits (60), Expect = 9.179e-23
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.179e-23
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 3 
Query:  195 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++       P
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFP 144

HSP 2 Score: 28.1054 bits (61), Expect = 9.179e-23
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  141 KAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
[Close]
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.198e-23
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 3 
Query:  195 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+       P
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 134

HSP 2 Score: 27.7202 bits (60), Expect = 9.198e-23
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            K +P +++R++     RQVQ   FL  +PP
Sbjct:  131 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 160
The following BLAST results are available for this feature:
BLAST of EY736111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS4_ACECL6.592e-2441.98Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_ACECL8.573e-2439.31Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_CHLRE1.674e-2342.86Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS6_ACECL2.460e-2347.52Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_CHLRE2.855e-2342.21Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACEAT5.421e-2347.52Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACEAT7.054e-2341.27Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_ACEAT9.179e-2346.53Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS7_ACECL9.179e-2346.53Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS2_ACEAT9.198e-2346.53Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736111 ID=EY736111; Name=EY736111; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTT
GCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTT
CACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACA
ATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAG
GTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCC
GCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCT
CCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTNGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTAT
CGGATNNTGACACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCA
AGCCACCAGGCGTCTAGGTTCCCAATTAAATGTGTGTAACCACCCATGCA
AAATTGTTGATTATTATTATGGTGTAACCCCCATAATGATCATTCGATCA
NTGGGGGGGTTCGGGTTGGCGTTTAATTTGGACTTAGGCCGGTTGTTGCT
GCTGCTCAGACCTTTTGTGGGTCTCTCCCCGAATTTTGGCTTTTTTTTTA
TATATATTTTAATAAATGGAATCCTTTGTTCCCAGCTCCATCAATCTGGG
TCCCGGATGTTCAGTTAAGGAGGTTAGAGTGTCTGGAATTTAGAAAACAA
AAAAAGGGGGGCCGCTCTTCAAGGATCCATCCTCGCTCT
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