EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURPS (50S ribosomal protein L1 OS=Burkholderia pseudomallei GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURP8 (50S ribosomal protein L1 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKR  A A K+DR KLY   EAL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKLSKRLQAFASKVDRQKLYAIEEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURP6 (50S ribosomal protein L1 OS=Burkholderia pseudomallei (strain 668) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURP1 (50S ribosomal protein L1 OS=Burkholderia pseudomallei (strain 1710b) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURP0 (50S ribosomal protein L1 OS=Burkholderia pseudomallei (strain 1106a) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURMS (50S ribosomal protein L1 OS=Burkholderia mallei (strain SAVP1) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURMA (50S ribosomal protein L1 OS=Burkholderia mallei GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURM9 (50S ribosomal protein L1 OS=Burkholderia mallei (strain NCTC 10229) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURM7 (50S ribosomal protein L1 OS=Burkholderia mallei (strain NCTC 10247) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURXL (50S ribosomal protein L1 OS=Burkholderia xenovorans (strain LB400) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKR  A A K+DR KLY   EAL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKLSKRLQAFAAKVDRQKLYAIDEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BURPS3.074e-1974.2450S ribosomal protein L1 OS=Burkholderia pseudomal... [more]
RL1_BURP83.074e-1975.7650S ribosomal protein L1 OS=Burkholderia phymatum ... [more]
RL1_BURP63.074e-1974.2450S ribosomal protein L1 OS=Burkholderia pseudomal... [more]
RL1_BURP13.074e-1974.2450S ribosomal protein L1 OS=Burkholderia pseudomal... [more]
RL1_BURP03.074e-1974.2450S ribosomal protein L1 OS=Burkholderia pseudomal... [more]
RL1_BURMS3.074e-1974.2450S ribosomal protein L1 OS=Burkholderia mallei (s... [more]
RL1_BURMA3.074e-1974.2450S ribosomal protein L1 OS=Burkholderia mallei GN... [more]
RL1_BURM93.074e-1974.2450S ribosomal protein L1 OS=Burkholderia mallei (s... [more]
RL1_BURM73.074e-1974.2450S ribosomal protein L1 OS=Burkholderia mallei (s... [more]
RL1_BURXL5.244e-1975.7650S ribosomal protein L1 OS=Burkholderia xenovoran... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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