EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURPP (50S ribosomal protein L1 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKR  A A K+DR KLY   EAL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKLSKRLQAFAAKVDRQKLYAIDEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURS3 (50S ribosomal protein L1 OS=Burkholderia sp. (strain 383) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   EAL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURM1 (50S ribosomal protein L1 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL  VKE A AKFNESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIDDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_POLSQ (50S ribosomal protein L1 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.944e-19
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            M KLSKR  AI  K+DR K YP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRG+VVLP
Sbjct:    1 MTKLSKRVKAIQSKVDRNKFYPLEDALNLVKECATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_RALME (50S ribosomal protein L1 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.168e-18
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR AA   KI+RTK YP  EAL+ VK  A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKVSKRVAANKAKIERTKFYPIDEALSLVKSCASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_DIAST (50S ribosomal protein L1 OS=Diaphorobacter sp. (strain TPSY) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.168e-18
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+K+  A+  K+D TKLY FAEA+  VKE A AKF+ESIDVAVQLG+D KKSDQ+VRG+VVLP
Sbjct:    1 MAKLTKKQKALQGKVDSTKLYAFAEAVALVKEAATAKFDESIDVAVQLGVDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_AZOSB (50S ribosomal protein L1 OS=Azoarcus sp. (strain BH72) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.168e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A+  K+DR ++YP AEAL  VKE A AKF+ESIDVAV LG+D +KSDQ+VRGSVVLP
Sbjct:    1 MAKISKRVQALRAKVDRNRIYPVAEALALVKECATAKFDESIDVAVNLGVDARKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_ACISJ (50S ribosomal protein L1 OS=Acidovorax sp. (strain JS42) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.168e-18
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+K+  A+  K+D TKLY FAEA+  VKE A AKF+ESIDVAVQLG+D KKSDQ+VRG+VVLP
Sbjct:    1 MAKLTKKQKALQGKVDSTKLYAFAEAVALVKEAATAKFDESIDVAVQLGVDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_JANMA (50S ribosomal protein L1 OS=Janthinobacterium sp. (strain Marseille) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKR  A   K+DRTK YPF  A+  +KE A AKF+ESID++VQLG+D KKSDQ+VRGSVVLP
Sbjct:    1 MAKLSKRVKAFKAKVDRTKAYPFDNAVALIKECASAKFDESIDISVQLGVDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURCJ (50S ribosomal protein L1 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BURPP5.244e-1975.7650S ribosomal protein L1 OS=Burkholderia phytofirm... [more]
RL1_BURS36.848e-1974.2450S ribosomal protein L1 OS=Burkholderia sp. (stra... [more]
RL1_BURM16.848e-1974.2450S ribosomal protein L1 OS=Burkholderia multivora... [more]
RL1_POLSQ8.944e-1971.2150S ribosomal protein L1 OS=Polynucleobacter sp. (... [more]
RL1_RALME1.168e-1874.2450S ribosomal protein L1 OS=Ralstonia metalliduran... [more]
RL1_DIAST1.168e-1869.7050S ribosomal protein L1 OS=Diaphorobacter sp. (st... [more]
RL1_AZOSB1.168e-1868.1850S ribosomal protein L1 OS=Azoarcus sp. (strain B... [more]
RL1_ACISJ1.168e-1869.7050S ribosomal protein L1 OS=Acidovorax sp. (strain... [more]
RL1_JANMA1.526e-1868.1850S ribosomal protein L1 OS=Janthinobacterium sp. ... [more]
RL1_BURCJ1.526e-1872.7350S ribosomal protein L1 OS=Burkholderia cepacia (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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