EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURCH (50S ribosomal protein L1 OS=Burkholderia cenocepacia (strain HI2424) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURCC (50S ribosomal protein L1 OS=Burkholderia cenocepacia (strain MC0-3) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURCA (50S ribosomal protein L1 OS=Burkholderia cenocepacia (strain AU 1054) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEDALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURVG (50S ribosomal protein L1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A   K+DR KLY   +AL  VKE A AKFNESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFEAKVDRQKLYAIEDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURCM (50S ribosomal protein L1 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURA4 (50S ribosomal protein L1 OS=Burkholderia ambifaria (strain MC40-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLY   +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYAIEDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_ACIAC (50S ribosomal protein L1 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+K+  A+  K+D TKLY FA+A+  VKE A AKF+ESIDVAVQLGID KKSDQ+VRG+VVLP
Sbjct:    1 MAKLTKKQKALQGKVDSTKLYAFADAVVLVKEAATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_VARPS (50S ribosomal protein L1 OS=Variovorax paradoxus (strain S110) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK++K+  A+A K+D  KLYP A+A+  VKE A AKF+ESIDVAVQLGID KKSDQ+VRG+VVLP
Sbjct:    1 MAKITKKQKALAGKVDSNKLYPLADAIGIVKEAATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_LARHH (50S ribosomal protein L1 OS=Laribacter hongkongensis (strain HLHK9) GN=rplA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR AA+   +DR KLYP  EA++ VK  A AKF+ESIDVAV LG+DP+KSDQ+VRGSVVLP
Sbjct:    1 MAKVSKRLAALKATVDRNKLYPVDEAISLVKGAATAKFDESIDVAVNLGVDPRKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_DECAR (50S ribosomal protein L1 OS=Dechloromonas aromatica (strain RCB) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+K+  A+A K+   KLYP  EALT  KETA+AKF+ESIDVAV LG+D +KSDQ+VRGSVVLP
Sbjct:    1 MAKLTKKQKALASKVVAQKLYPLQEALTLAKETAIAKFDESIDVAVNLGVDARKSDQVVRGSVVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BURCH1.526e-1872.7350S ribosomal protein L1 OS=Burkholderia cenocepac... [more]
RL1_BURCC1.526e-1872.7350S ribosomal protein L1 OS=Burkholderia cenocepac... [more]
RL1_BURCA1.526e-1872.7350S ribosomal protein L1 OS=Burkholderia cenocepac... [more]
RL1_BURVG1.993e-1872.7350S ribosomal protein L1 OS=Burkholderia vietnamie... [more]
RL1_BURCM1.993e-1872.7350S ribosomal protein L1 OS=Burkholderia ambifaria... [more]
RL1_BURA41.993e-1872.7350S ribosomal protein L1 OS=Burkholderia ambifaria... [more]
RL1_ACIAC1.993e-1869.7050S ribosomal protein L1 OS=Acidovorax avenae subs... [more]
RL1_VARPS2.602e-1868.1850S ribosomal protein L1 OS=Variovorax paradoxus (... [more]
RL1_LARHH2.602e-1868.1850S ribosomal protein L1 OS=Laribacter hongkongens... [more]
RL1_DECAR3.399e-1868.1850S ribosomal protein L1 OS=Dechloromonas aromatic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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