EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL11_BURPP (50S ribosomal protein L11 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = -3
Query:  206 KVGX*TRGKLEDIAKAKAPILTAADLDAAVRTIXGSAGSMGITVEGI 346
            KVG  TR + EDIAK K P LTAADLDAAVRTI GSA SMGITVEG+
Sbjct:   97 KVGKITRAQAEDIAKTKMPDLTAADLDAAVRTIAGSARSMGITVEGV 143          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_XANOR (50S ribosomal protein L1 OS=Xanthomonas oryzae pv. oryzae GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = -2
Query:    3 SKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 188
            SKR  AIA  +   K Y F +A+  +K    AKF ESIDVAV+LG+D KKSDQ VRGS VLP
Sbjct:    4 SKRVKAIAAAVAPGKAYAFEDAIKILKTATKAKFVESIDVAVRLGVDAKKSDQQVRGSTVLP 65          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_XANOM (50S ribosomal protein L1 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = -2
Query:    3 SKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 188
            SKR  AIA  +   K Y F +A+  +K    AKF ESIDVAV+LG+D KKSDQ VRGS VLP
Sbjct:    4 SKRVKAIAAAVAPGKAYAFEDAIKILKTATKAKFVESIDVAVRLGVDAKKSDQQVRGSTVLP 65          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_XANCP (50S ribosomal protein L1 OS=Xanthomonas campestris pv. campestris GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -2
Query:    3 SKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 188
            SKR  AIA  +   K Y F +A+  +K +  AKF ESIDVAV+LG+D KKSDQ VRGS VLP
Sbjct:    4 SKRVKAIAAAVVPGKTYAFEDAIKILKTSTKAKFVESIDVAVRLGVDAKKSDQQVRGSTVLP 65          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_XANCB (50S ribosomal protein L1 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -2
Query:    3 SKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 188
            SKR  AIA  +   K Y F +A+  +K +  AKF ESIDVAV+LG+D KKSDQ VRGS VLP
Sbjct:    4 SKRVKAIAAAVVPGKTYAFEDAIKILKTSTKAKFVESIDVAVRLGVDAKKSDQQVRGSTVLP 65          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_XANC8 (50S ribosomal protein L1 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -2
Query:    3 SKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 188
            SKR  AIA  +   K Y F +A+  +K +  AKF ESIDVAV+LG+D KKSDQ VRGS VLP
Sbjct:    4 SKRVKAIAAAVVPGKTYAFEDAIKILKTSTKAKFVESIDVAVRLGVDAKKSDQQVRGSTVLP 65          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_STRZP (50S ribosomal protein L1 OS=Streptococcus pneumoniae (strain P1031) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK SK+  A  +KID TK Y   EA+   KET  AKF+ +++VA  L ID KK+DQ +RG++VLP
Sbjct:    1 MAKKSKQLRAALEKIDSTKAYSVEEAVALAKETNFAKFDATVEVAYNLNIDVKKADQQIRGAMVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_STRZJ (50S ribosomal protein L1 OS=Streptococcus pneumoniae (strain JJA) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK SK+  A  +KID TK Y   EA+   KET  AKF+ +++VA  L ID KK+DQ +RG++VLP
Sbjct:    1 MAKKSKQLRAALEKIDSTKAYSVEEAVALAKETNFAKFDATVEVAYNLNIDVKKADQQIRGAMVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_STRSV (50S ribosomal protein L1 OS=Streptococcus sanguinis (strain SK36) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK SK+  A  +KID TK Y   EA+   KET  AKF+ +++VA  L ID KK+DQ +RG++VLP
Sbjct:    1 MAKKSKQLRAALEKIDSTKAYSVEEAVALAKETNFAKFDATVEVAYNLNIDVKKADQQIRGAMVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_STRS2 (50S ribosomal protein L1 OS=Streptococcus suis (strain 98HAH33) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK SK   A  +KID TKLY   EA+   K+T  AKF+ S++VA  L ID +K+DQ +RG++VLP
Sbjct:    1 MAKKSKNLRAALEKIDSTKLYSVEEAVALAKKTNFAKFDASVEVAYNLNIDVRKADQQIRGAMVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_BURPP3.081e-1176.6050S ribosomal protein L11 OS=Burkholderia phytofir... [more]
RL1_XANOR4.024e-1158.0650S ribosomal protein L1 OS=Xanthomonas oryzae pv.... [more]
RL1_XANOM4.024e-1158.0650S ribosomal protein L1 OS=Xanthomonas oryzae pv.... [more]
RL1_XANCP4.024e-1158.0650S ribosomal protein L1 OS=Xanthomonas campestris... [more]
RL1_XANCB4.024e-1158.0650S ribosomal protein L1 OS=Xanthomonas campestris... [more]
RL1_XANC84.024e-1158.0650S ribosomal protein L1 OS=Xanthomonas campestris... [more]
RL1_STRZP4.024e-1151.5250S ribosomal protein L1 OS=Streptococcus pneumoni... [more]
RL1_STRZJ4.024e-1151.5250S ribosomal protein L1 OS=Streptococcus pneumoni... [more]
RL1_STRSV4.024e-1151.5250S ribosomal protein L1 OS=Streptococcus sanguini... [more]
RL1_STRS24.024e-1151.5250S ribosomal protein L1 OS=Streptococcus suis (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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