EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_METFK (50S ribosomal protein L1 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MA +SKR  A+  K+DR K+YP  EAL  VKETA AKF+ES+D  + LGID +KSDQLVRG++VLP
Sbjct:    1 MANVSKRIKALRAKVDRNKVYPVTEALALVKETATAKFDESVDAVINLGIDARKSDQLVRGALVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_PELPD (50S ribosomal protein L1 OS=Pelobacter propionicus (strain DSM 2379) GN=rplA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 39/66 (59.09%), Postives = 56/66 (84.85%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            M+K +K+ AA ++KIDRTK+YP A A+  VK+ A AKF+E++DVAV+LG+DP+ +DQ+VRG+VVLP
Sbjct:    1 MSKTAKKLAAASEKIDRTKVYPVAAAIDVVKQAAYAKFDETVDVAVRLGVDPRHADQMVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_THIDA (50S ribosomal protein L1 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.428e-16
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MA +SKR  A+ +KIDR++ YP  +AL  VK++A AKF+ESIDVAV LG+D +KSDQ+VRG+VVLP
Sbjct:    1 MANVSKRLRALKEKIDRSRNYPVVDALQLVKDSATAKFDESIDVAVNLGVDARKSDQMVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_RHOFD (50S ribosomal protein L1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.428e-16
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            M +L+K+  +   K+D  KLYP A+AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRG+VVLP
Sbjct:    1 MTQLTKKQKSFQGKVDSNKLYPLADALGLVKECATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_VEREI (50S ribosomal protein L1 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rplA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.865e-16
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            M +L+K+  A+  K+D T+LY F +AL  VK+ A AKF+ESIDVAVQLGID KKSDQ+VRG+VVLP
Sbjct:    1 MPQLTKKQKAMQGKVDSTRLYAFTDALVLVKQAATAKFDESIDVAVQLGIDAKKSDQVVRGAVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEAM (50S ribosomal protein L1 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+T +KE A AKF ES+DVAV LG+DP+KSDQ VRG++VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKAYDINEAITLLKELATAKFVESVDVAVNLGVDPRKSDQNVRGAIVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_LEPCP (50S ribosomal protein L1 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR  A   KI+ TKLY   +A+  +KE AVAKF+ESIDVAVQLG+D KKSDQ+VRG+VV+P
Sbjct:    1 MAKLTKRQKAQVGKIETTKLYAVDDAIALIKEFAVAKFDESIDVAVQLGVDAKKSDQVVRGAVVMP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_NITOC (50S ribosomal protein L1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL KR   I +K++  KLYP  EAL  +KE A  KF ES+DVAV LG+DP+KSDQ+VRGS VLP
Sbjct:    1 MAKLGKRLVGIREKLEPGKLYPVEEALNLLKEVAKVKFEESVDVAVNLGVDPRKSDQVVRGSTVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEFN (50S ribosomal protein L1 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KRA  I +K+D TKLY   EA+  ++E A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRARVIREKVDATKLYDINEAVVLLQELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_CHRVO (50S ribosomal protein L1 OS=Chromobacterium violaceum GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR   +   +DR KLY   EA+  VK  A AKF+ESID+AV LG+DP+KSDQ+VRGSVVLP
Sbjct:    1 MAKISKRLQNLKATVDRNKLYAVDEAIALVKAAATAKFDESIDIAVNLGVDPRKSDQVVRGSVVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_METFK6.410e-1762.1250S ribosomal protein L1 OS=Methylobacillus flagel... [more]
RL1_PELPD8.371e-1759.0950S ribosomal protein L1 OS=Pelobacter propionicus... [more]
RL1_THIDA1.428e-1662.1250S ribosomal protein L1 OS=Thiobacillus denitrifi... [more]
RL1_RHOFD1.428e-1665.1550S ribosomal protein L1 OS=Rhodoferax ferrireduce... [more]
RL1_VEREI1.865e-1663.6450S ribosomal protein L1 OS=Verminephrobacter eise... [more]
RL1_SHEAM2.436e-1662.1250S ribosomal protein L1 OS=Shewanella amazonensis... [more]
RL1_LEPCP2.436e-1665.1550S ribosomal protein L1 OS=Leptothrix cholodnii (... [more]
RL1_NITOC3.181e-1662.1250S ribosomal protein L1 OS=Nitrosococcus oceani (... [more]
RL1_SHEFN4.155e-1663.6450S ribosomal protein L1 OS=Shewanella frigidimari... [more]
RL1_CHRVO4.155e-1662.1250S ribosomal protein L1 OS=Chromobacterium violac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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