EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_MARMS (50S ribosomal protein L1 OS=Marinomonas sp. (strain MWYL1) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KRA  IA+K++ TKLY   EA+  + E +  KF ESIDV+V LG+DP+KSDQ+VRGS VLP
Sbjct:    1 MAKLTKRARLIAEKVEATKLYSVEEAVALLSELSTVKFKESIDVSVNLGVDPRKSDQVVRGSTVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_HALHL (50S ribosomal protein L1 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +++D    YP  EAL  VKE A A+F ESIDVAV LG+DP+KSDQ+VRGS VLP
Sbjct:    1 MAKLTKRQKQIRERVDGNHAYPVDEALALVKELATARFPESIDVAVNLGVDPRKSDQIVRGSTVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_COXBU (50S ribosomal protein L1 OS=Coxiella burnetii GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = -2
Query:    3 AKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 197
            AKL+K+   +A+K+ R K YP +EA+  +KE A AKFNESIDVA+ LGID +KSDQ +RG+ VLP
Sbjct:    3 AKLTKKRKTLAEKVQRDKTYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLP 67          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_COXBR (50S ribosomal protein L1 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = -2
Query:    3 AKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 197
            AKL+K+   +A+K+ R K YP +EA+  +KE A AKFNESIDVA+ LGID +KSDQ +RG+ VLP
Sbjct:    3 AKLTKKRKTLAEKVQRDKTYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLP 67          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_COXBN (50S ribosomal protein L1 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = -2
Query:    3 AKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 197
            AKL+K+   +A+K+ R K YP +EA+  +KE A AKFNESIDVA+ LGID +KSDQ +RG+ VLP
Sbjct:    3 AKLTKKRKTLAEKVQRDKAYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLP 67          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_COXB2 (50S ribosomal protein L1 OS=Coxiella burnetii (strain CbuG_Q212) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = -2
Query:    3 AKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 197
            AKL+K+   +A+K+ R K YP +EA+  +KE A AKFNESIDVA+ LGID +KSDQ +RG+ VLP
Sbjct:    3 AKLTKKRKTLAEKVQRDKAYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLP 67          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_COXB1 (50S ribosomal protein L1 OS=Coxiella burnetii (strain CbuK_Q154) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = -2
Query:    3 AKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 197
            AKL+K+   +A+K+ R K YP +EA+  +KE A AKFNESIDVA+ LGID +KSDQ +RG+ VLP
Sbjct:    3 AKLTKKRKTLAEKVQRDKAYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLP 67          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TKLY   +A+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHESR (50S ribosomal protein L1 OS=Shewanella sp. (strain MR-7) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TKLY   +A+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHESM (50S ribosomal protein L1 OS=Shewanella sp. (strain MR-4) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TKLY   +A+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_MARMS5.426e-1660.6150S ribosomal protein L1 OS=Marinomonas sp. (strai... [more]
RL1_HALHL9.256e-1662.1250S ribosomal protein L1 OS=Halorhodospira halophi... [more]
RL1_COXBU1.209e-1558.4650S ribosomal protein L1 OS=Coxiella burnetii GN=r... [more]
RL1_COXBR1.209e-1558.4650S ribosomal protein L1 OS=Coxiella burnetii (str... [more]
RL1_COXBN1.209e-1558.4650S ribosomal protein L1 OS=Coxiella burnetii (str... [more]
RL1_COXB21.209e-1558.4650S ribosomal protein L1 OS=Coxiella burnetii (str... [more]
RL1_COXB11.209e-1558.4650S ribosomal protein L1 OS=Coxiella burnetii (str... [more]
RL1_SHESW1.579e-1562.1250S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHESR1.579e-1562.1250S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHESM1.579e-1562.1250S ribosomal protein L1 OS=Shewanella sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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