EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHESA (50S ribosomal protein L1 OS=Shewanella sp. (strain ANA-3) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TKLY   +A+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TKLY   +A+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEON (50S ribosomal protein L1 OS=Shewanella oneidensis GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TKLY   +A+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALTY (50S ribosomal protein L1 OS=Salmonella typhimurium GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALTI (50S ribosomal protein L1 OS=Salmonella typhi GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALSV (50S ribosomal protein L1 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALPK (50S ribosomal protein L1 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALPC (50S ribosomal protein L1 OS=Salmonella paratyphi C (strain RKS4594) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALPB (50S ribosomal protein L1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALPA (50S ribosomal protein L1 OS=Salmonella paratyphi A GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SHESA1.579e-1562.1250S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHEPC1.579e-1562.1250S ribosomal protein L1 OS=Shewanella putrefacien... [more]
RL1_SHEON1.579e-1562.1250S ribosomal protein L1 OS=Shewanella oneidensis ... [more]
RL1_SALTY1.579e-1562.1250S ribosomal protein L1 OS=Salmonella typhimurium... [more]
RL1_SALTI1.579e-1562.1250S ribosomal protein L1 OS=Salmonella typhi GN=rp... [more]
RL1_SALSV1.579e-1562.1250S ribosomal protein L1 OS=Salmonella schwarzengr... [more]
RL1_SALPK1.579e-1562.1250S ribosomal protein L1 OS=Salmonella paratyphi A... [more]
RL1_SALPC1.579e-1562.1250S ribosomal protein L1 OS=Salmonella paratyphi C... [more]
RL1_SALPB1.579e-1562.1250S ribosomal protein L1 OS=Salmonella paratyphi B... [more]
RL1_SALPA1.579e-1562.1250S ribosomal protein L1 OS=Salmonella paratyphi A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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