EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALNS (50S ribosomal protein L1 OS=Salmonella newport (strain SL254) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALHS (50S ribosomal protein L1 OS=Salmonella heidelberg (strain SL476) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALG2 (50S ribosomal protein L1 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALEP (50S ribosomal protein L1 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALDC (50S ribosomal protein L1 OS=Salmonella dublin (strain CT_02021853) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALCH (50S ribosomal protein L1 OS=Salmonella choleraesuis GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SALA4 (50S ribosomal protein L1 OS=Salmonella agona (strain SL483) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKFNES+DVAV LGID +KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_ALHEH (50S ribosomal protein L1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MA+L+KR  AI +KID  + YP AEAL  ++E   AKF ES++VAV LG+DP+KSDQ+VRGS VLP
Sbjct:    1 MARLTKRQKAIREKIDPAQQYPVAEALGLLRELPGAKFTESVEVAVNLGVDPRKSDQIVRGSTVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_THISH (50S ribosomal protein L1 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR  AI +KI+  KLYP  EA   +KE +  KF ES+DV+V LG+DP+KSDQ+VRGS VLP
Sbjct:    1 MAKLTKRMRAIREKIEAGKLYPANEAFALLKEISSVKFAESVDVSVNLGVDPRKSDQVVRGSTVLP 66
[Close]
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_METPP (50S ribosomal protein L1 OS=Methylibium petroleiphilum (strain PM1) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = -2 
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR  A+  K+D  KLY   +A   V++ A AKF+ESIDV+VQLGID KKSDQ+VRG+VVLP
Sbjct:    1 MAKLTKRQKALEGKVDSLKLYAIDDAFKIVRDCATAKFDESIDVSVQLGIDAKKSDQVVRGAVVLP 66
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SALNS1.579e-1562.1250S ribosomal protein L1 OS=Salmonella newport (st... [more]
RL1_SALHS1.579e-1562.1250S ribosomal protein L1 OS=Salmonella heidelberg ... [more]
RL1_SALG21.579e-1562.1250S ribosomal protein L1 OS=Salmonella gallinarum ... [more]
RL1_SALEP1.579e-1562.1250S ribosomal protein L1 OS=Salmonella enteritidis... [more]
RL1_SALDC1.579e-1562.1250S ribosomal protein L1 OS=Salmonella dublin (str... [more]
RL1_SALCH1.579e-1562.1250S ribosomal protein L1 OS=Salmonella choleraesui... [more]
RL1_SALA41.579e-1562.1250S ribosomal protein L1 OS=Salmonella agona (stra... [more]
RL1_ALHEH2.062e-1560.6150S ribosomal protein L1 OS=Alkalilimnicola ehrlic... [more]
RL1_THISH2.693e-1560.6150S ribosomal protein L1 OS=Thioalkalivibrio sp. (... [more]
RL1_METPP2.693e-1562.1250S ribosomal protein L1 OS=Methylibium petroleiph... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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