EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+K+  AI   +D TK Y   EAL  +K+ A AKFNES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKKMKAIKAGVDSTKAYEINEALALLKQFATAKFNESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEPA (50S ribosomal protein L1 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KRA  I +K++ TK Y   EA+  +KE A AKF ES+DVAV LG+DP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRARLIREKVEATKSYDINEAVALLKELATAKFLESVDVAVNLGVDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHELP (50S ribosomal protein L1 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KRA  I +K++ TK Y   EA+  +KE A AKF ES+DVAV LG+DP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRARLIREKVEATKSYDINEAVALLKELATAKFVESVDVAVNLGVDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEHH (50S ribosomal protein L1 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KRA  I +K++ TK Y   EA+  +KE A AKF ES+DVAV LG+DP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRARLIREKVEATKSYDINEAVALLKELATAKFLESVDVAVNLGVDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEB9 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS195) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKSYDINEAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEB8 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS185) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKSYDINEAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_SHEB2 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS223) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKL+KR   I +K+D TK Y   EA+  +KE A AKF ES+DVAV LGIDP+KSDQ VRG+ VLP
Sbjct:    1 MAKLTKRMRVIREKVDGTKSYDINEAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSK+A AIA  +D+ KLY  AEA+  V+E A +KF+E+I++AV LG+DP+ +DQ+VRG V LP
Sbjct:    1 MAKLSKKAKAIAAAVDKNKLYTVAEAIALVREYATSKFDETIELAVNLGVDPRHADQMVRGVVTLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_NEIMF (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A+   ++  KLY   EA+  VK+ A AKF+ES+DV+  LG+DP+KSDQ++RGSVVLP
Sbjct:    1 MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_NEIMB (50S ribosomal protein L1 OS=Neisseria meningitidis serogroup B GN=rplA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A+   ++  KLY   EA+  VK+ A AKF+ES+DV+  LG+DP+KSDQ++RGSVVLP
Sbjct:    1 MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDVSFNLGVDPRKSDQVIRGSVVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ACTSZ2.693e-1562.1250S ribosomal protein L1 OS=Actinobacillus succino... [more]
RL1_SHEPA3.517e-1560.6150S ribosomal protein L1 OS=Shewanella pealeana (s... [more]
RL1_SHELP3.517e-1560.6150S ribosomal protein L1 OS=Shewanella loihica (st... [more]
RL1_SHEHH3.517e-1560.6150S ribosomal protein L1 OS=Shewanella halifaxensi... [more]
RL1_SHEB93.517e-1562.1250S ribosomal protein L1 OS=Shewanella baltica (st... [more]
RL1_SHEB83.517e-1562.1250S ribosomal protein L1 OS=Shewanella baltica (st... [more]
RL1_SHEB23.517e-1562.1250S ribosomal protein L1 OS=Shewanella baltica (st... [more]
RL1_ZYMMO4.594e-1557.5850S ribosomal protein L1 OS=Zymomonas mobilis GN=r... [more]
RL1_NEIMF4.594e-1556.0650S ribosomal protein L1 OS=Neisseria meningitidis... [more]
RL1_NEIMB4.594e-1556.0650S ribosomal protein L1 OS=Neisseria meningitidis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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