EY736057

Overview
NameEY736057
Unique NameEY736057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736057_ssr468 microsatellite EY736057_ssr468:468..479. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.254e-11
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTG 681
            +KVAINGFGRIGR   R    ++   L+VV VND    +  +HL+KYD++ G F  +V++VD     V+GK +K  S       P  +L ID+ ++ TG
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTG 98          

HSP 2 Score: 23.8682 bits (50), Expect = 7.254e-11
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            A + I AGAKKV+   P TG
Sbjct:  106 AQAHIEAGAKKVLISAPATG 125          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.254e-11
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTG 681
            +KVAINGFGRIGR   R    ++   L+VV VND    +  +HL+KYD++ G F  +V++VD     V+GK +K  S       P  +L ID+ ++ TG
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTG 98          

HSP 2 Score: 23.8682 bits (50), Expect = 7.254e-11
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            A + I AGAKKV+   P TG
Sbjct:  106 AQAHIEAGAKKVLISAPATG 125          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.254e-11
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTG 681
            +KVAINGFGRIGR   R    ++   L+VV VND    +  +HL+KYD++ G F  +V++VD     V+GK +K  S       P  +L ID+ ++ TG
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTG 98          

HSP 2 Score: 23.8682 bits (50), Expect = 7.254e-11
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            A + I AGAKKV+   P TG
Sbjct:  106 AQAHIEAGAKKVLISAPATG 125          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.254e-11
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTG 681
            +KVAINGFGRIGR   R    ++   L+VV VND    +  +HL+KYD++ G F  +V++VD     V+GK +K  S       P  +L ID+ ++ TG
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTG 98          

HSP 2 Score: 23.8682 bits (50), Expect = 7.254e-11
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            A + I AGAKKV+   P TG
Sbjct:  106 AQAHIEAGAKKVLISAPATG 125          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.254e-11
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTG 681
            +KVAINGFGRIGR   R    ++   L+VV VND    +  +HL+KYD++ G F  +V++VD     V+GK +K  S       P  +L ID+ ++ TG
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTG 98          

HSP 2 Score: 23.8682 bits (50), Expect = 7.254e-11
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            A + I AGAKKV+   P TG
Sbjct:  106 AQAHIEAGAKKVLISAPATG 125          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.259e-11
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL 684
            ++V INGFGRIGR   R    R D  +++V +ND    +  ++++KYDS  G F+  V+ V    L V+GK I+V S R P      E+ +D+ ++ TGL
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVE-VQGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGL 99          

HSP 2 Score: 22.3274 bits (46), Expect = 7.259e-11
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  717 IHAGAKKVITRGP 755
            I AGAKKV+  GP
Sbjct:  110 IQAGAKKVVITGP 122          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  388 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTG 681
            KVAINGFGRIGR  LR     +   L+VV +ND    +  +HL KYDS  G F  +++ V      V+GK +KV +   P   P  ELGID+ ++ TG
Sbjct:    3 KVAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGELGIDVVLECTG 97          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 50/131 (38.17%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  385 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVEN-ASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGLSGGRPLWREARSTLVPRK*LPVGPPQGAKM 774
            ++VAINGFGRIGR  LR     K   +DVV +ND     + A+++ KYDS  G +  +V   D + L +DGK IK    R P   P  +  IDI I+ TG+   + L  E   T   +K +  GP   A M
Sbjct:    2 VRVAINGFGRIGRIVLRI--AMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEVTH-DDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFTAKDL-AEKHITAGAKKVVITGPSATAPM 128          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.451e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  397 INGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL 684
            INGFGRIGR   R    +K S +++V +ND    E  ++++KYDS  G F   V++ D   L V+GK I+V + R P      E+G+D+  + TG+
Sbjct:    1 INGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVEVKDGH-LVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGI 93          

HSP 2 Score: 22.3274 bits (46), Expect = 9.451e-11
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = 3
Query:  693 TAPVAGSAIHAGAKKVITRGP 755
            T   A   I AGAKKV+  GP
Sbjct:   96 TDETARKHITAGAKKVVLTGP 116          
The following BLAST results are available for this feature:
BLAST of EY736057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
G3P1_STAAS7.254e-1140.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR7.254e-1140.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN7.254e-1140.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM7.254e-1140.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC7.254e-1140.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3PC_TRYBB7.259e-1138.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CLOPA7.668e-1142.86Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P1_CANGA7.668e-1138.17Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_KLEPN9.451e-1138.54Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-E02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736057 ID=EY736057; Name=EY736057; organism=Citrus sinensis; type=EST; length=920bp
CCGCCGCCCCCGCAACGCGGTAACCTTGCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCACGCCGTCGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCA
GCAAATCAGCAACTAAGCCACAGGGCATGGCCAGTCACTCAGCTCTTGCT
CCCTCAAGAATCCCGGCCATCACTAGGATTCCATCCAAGACTACTCACTC
TTTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTGGCTGAATTCGCTG
GCCTTCGAGCAAATGCAGGCGCGACATACGCCACTGGTGCTAGAGATGCA
TCCTTCTTTGATGCTGTGACTGCTCAACTTACTCCTAAGGTTGCAGCAGG
ATCAGTTCCTGTAAAGAAAGAAACCGTGGCCAAATTGAAGGTGGCAATTA
ATGGATTTGGACGTATTGGCAGGAACTTCCTCCGATGCTGGCACGGCAGG
AAAGACTCACCCCTTGATGTTGTTGTTGTCAATGACAGTGGTGGTGTCGA
GAATGCTTCACACCTTGTAAAATATGACTCATTGCTTGGAACTTTTAAAG
CAGACGTGAAAATAGTGGACCACGAGACCCTCTCTGTCGATGGTAAGCTC
ATCAAGGTTGTCTCTAACAGGGGACCTCCCCCCCCCCCTGGGGCTGAGCT
CGGAATTGACATCCCTATTCAGGGAACCGGACTCTCCGGTGGACGGCCCC
TGTGGCGGGAAGCGCGATCCACGCTGGTGCCAAGAAAGTAATTACCCGTG
GGCCCCCCACAGGGGGCGAAAATGTCCACCCATCTGTCGGTGGGGGTCGC
CGACCACGGTCCCCGAGCCCCACGTTCCCCCCATTGCTCCGCACCCCTCC
CCGCCCCACCCGCGGGGCCGCCGCCCCCCGCCACCGTCCCCACCCCCAAA
CTCTGGGTGGTGCTCGGACC
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